Tracking the evolution and geographic spread of Influenza A.

Donovan Parks , Norman MacDonald , Robert Beiko
PLOS Currents 1

8
2009
Evaluation of the Microba Community Profiler for Taxonomic Profiling of Metagenomic Datasets From the Human Gut Microbiome.

Gene W. Tyson , Philip Hugenholtz , Donovan H. Parks , Patricia Vera-Wolf
Frontiers in Microbiology 12 643682 -643682

2
2021
Critical evaluation of faecal microbiome preservation using metagenomic analysis

Gene W. Tyson , Philip Hugenholtz , Nicola Z. Angel , Joel A. Boyd
ISME Communications 1 ( 1) 1 -10

5
2021
A Phylogenomic Analysis of the Bacterial Phylum Fibrobacteres

Nurdyana Abdul Rahman , Donovan H. Parks , Inka Vanwonterghem , Mark Morrison
Frontiers in Microbiology 6 1469 -1469

44
2016
On the origins of oxygenic photosynthesis and aerobic respiration in Cyanobacteria

Rochelle M. Soo , James Hemp , Donovan H. Parks , Woodward W. Fischer
Science 355 ( 6332) 1436 -1440

297
2017
Culture- and metagenomics-enabled analyses of the Methanosphaera genus reveals their monophyletic origin and differentiation according to genome size.

Emily C Hoedt , Donovan H Parks , James G Volmer , Carly P Rosewarne
The ISME Journal 12 ( 12) 2942 -2953

21
2018
A phylogenomic and ecological analysis of the globally abundant Marine Group II archaea (Ca. Poseidoniales ord. nov.).

Christian Rinke , Francesco Rubino , Lauren F. Messer , Noha Youssef
The ISME Journal 13 ( 3) 663 -675

105
2019
35
2020
Evidence for non-methanogenic metabolisms in globally distributed archaeal clades basal to the Methanomassiliicoccales.

Laura A. Zinke , Paul N. Evans , Christian Santos‐Medellín , Alena L. Schroeder
Environmental Microbiology 23 ( 1) 340 -357

2
2021
GenGIS 2: Geospatial Analysis of Traditional and Genetic Biodiversity, with New Gradient Algorithms and an Extensible Plugin Framework

Donovan H. Parks , Timothy Mankowski , Somayyeh Zangooei , Michael S. Porter
PLoS ONE 8 ( 7) e69885

82
2013
Genome-Centric Analysis of Microbial Populations Enriched by Hydraulic Fracture Fluid Additives in a Coal Bed Methane Production Well.

Steven J. Robbins , Paul N. Evans , Donovan H. Parks , Suzanne D. Golding
Frontiers in Microbiology 7 ( 731) 731 -731

33
2016
Comparative Genomic Analysis of the Class Epsilonproteobacteria and Proposed Reclassification to Epsilonbacteraeota (phyl. nov.)

David W. Waite , Inka Vanwonterghem , Christian Rinke , Donovan H. Parks
Frontiers in Microbiology 8 682 -682

296
2017
Methylotrophic methanogenesis discovered in the archaeal phylum Verstraetearchaeota.

Inka Vanwonterghem , Paul N. Evans , Donovan H. Parks , Paul D. Jensen
Nature microbiology 1 ( 12) 16170

413
2016
Measuring Community Similarity with Phylogenetic Networks

Donovan H. Parks , Robert G. Beiko
Molecular Biology and Evolution 29 ( 12) 3947 -3958

15
2012
Comparative Genomics of Candidate Phylum TM6 Suggests That Parasitism Is Widespread and Ancestral in This Lineage

Yun Kit Yeoh , Yuji Sekiguchi , Donovan H. Parks , Philip Hugenholtz
Molecular Biology and Evolution 33 ( 4) 915 -927

45
2016
An evolving view of methane metabolism in the Archaea.

Paul N. Evans , Joel A. Boyd , Andy O. Leu , Ben J. Woodcroft
Nature Reviews Microbiology 17 ( 4) 219 -232

306
2019
The importance of designating type material for uncultured taxa

Maria Chuvochina , Christian Rinke , Donovan H Parks , Michael S Rappé
Systematic and Applied Microbiology 42 ( 1) 15 -21

27
2019
A catalogue of 136 microbial draft genomes from Red Sea metagenomes

Mohamed F. Haroon , Luke R. Thompson , Donovan H. Parks , Philip Hugenholtz
Scientific Data 3 ( 1) 160050 -160050

33
2016
Rapid identification of high-confidence taxonomic assignments for metagenomic data

Norman J. MacDonald , Donovan H. Parks , Robert G. Beiko
Nucleic Acids Research 40 ( 14)

50
2012
STAMP: statistical analysis of taxonomic and functional profiles

Donovan H. Parks , Gene W. Tyson , Philip Hugenholtz , Robert G. Beiko
Bioinformatics 30 ( 21) 3123 -3124

2,836
2014