Transient Inability to Manage Proteobacteria Promotes Chronic Gut Inflammation in TLR5-Deficient Mice

Frederic A. Carvalho , Omry Koren , Julia K. Goodrich , Malin E.V. Johansson
Cell Host & Microbe 12 ( 2) 139 -152

452
2012
Innate and adaptive immunity interact to quench microbiome flagellar motility in the gut

Tyler C. Cullender , Benoit Chassaing , Anders Janzon , Krithika Kumar
Cell Host & Microbe 14 ( 5) 571 -581

216
2013
Genetic Determinants of the Gut Microbiome in UK Twins

Julia K. Goodrich , Emily R. Davenport , Michelle Beaumont , Matthew A. Jackson
Cell Host & Microbe 19 ( 5) 731 -743

837
2016
Diet-Induced Alterations in Gut Microflora Contribute to Lethal Pulmonary Damage in TLR2/TLR4-Deficient Mice

Yewei Ji , Shengyi Sun , Julia K. Goodrich , Hana Kim
Cell Reports 8 ( 1) 137 -149

31
2014
Host Remodeling of the Gut Microbiome and Metabolic Changes during Pregnancy

Omry Koren , Julia K. Goodrich , Tyler C. Cullender , Aymé Spor
Cell 150 ( 3) 470 -480

1,789
2012
Conducting a microbiome study.

Julia K. Goodrich , Sara C. Di Rienzi , Angela C. Poole , Omry Koren
Cell 158 ( 2) 250 -262

396
2014
Human Genetics Shape the Gut Microbiome

Julia K. Goodrich , Jillian L. Waters , Angela C. Poole , Jessica L. Sutter
Cell 159 ( 4) 789 -799

2,647
2014
Interleukin-1β (IL-1β) promotes susceptibility of Toll-like receptor 5 (TLR5) deficient mice to colitis

Frederic A Carvalho , Ilke Nalbantoglu , Sophie Ortega-Fernandez , Jesse D Aitken
Gut 61 ( 3) 373 -384

52
2012
AIEC pathobiont instigates chronic colitis in susceptible hosts by altering microbiota composition

Benoit Chassaing , Omry Koren , Frederic A Carvalho , Ruth E Ley
Gut 63 ( 7) 1069 -1080

134
2014
Obesity and the human microbiome.

Ruth E Ley
Current Opinion in Gastroenterology 26 ( 1) 5 -11

923
2010
Impact of training sets on classification of high-throughput bacterial 16s rRNA gene surveys.

Jeffrey J Werner , Omry Koren , Philip Hugenholtz , Todd Z DeSantis
The ISME Journal 6 ( 1) 94 -103

558
2012
Selection on soil microbiomes reveals reproducible impacts on plant function.

Kevin Panke-Buisse , Angela C Poole , Julia K Goodrich , Ruth E Ley
The ISME Journal 9 ( 4) 980 -989

526
2015
Supervised classification of microbiota mitigates mislabeling errors

Dan Knights , Justin Kuczynski , Omry Koren , Ruth E Ley
The ISME Journal 5 ( 4) 570 -573

37
2011
Alterations to the Gut Microbiome Impair Bone Strength and Tissue Material Properties

Jason D Guss , Michael W Horsfield , Fernanda F Fontenele , Taylor N Sandoval
Journal of Bone and Mineral Research 32 ( 6) 1343 -1353

60
2017
High-resolution QTL mapping with Diversity Outbred mice identifies genetic variants that impact gut microbiome composition

Florencia Schlamp , David Y Zhang , Juan Felipe Beltrán , Elissa J Cosgrove
bioRxiv 722744

1
2019
Fungal and bacterial responses to phenolic compounds and amino acids in high altitude barren soils

Ruth E Ley , Steven K Schmidt
Soil Biology & Biochemistry 34 ( 7) 989 -995

44
2002
Direct sequencing of the human microbiome readily reveals community differences

Justin Kuczynski , Elizabeth K Costello , Diana R Nemergut , Jesse Zaneveld
Genome Biology 11 ( 5) 210 -210

136
2010
Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications.

Pelin Yilmaz , Renzo Kottmann , Dawn Field , Rob Knight
Nature Biotechnology 29 ( 5) 415 -420

636
2011