Version 4.0 of PaxDb: Protein abundance data, integrated across model organisms, tissues, and cell‐lines

Mingcong Wang , Christina J. Herrmann , Milan Simonovic , Damian Szklarczyk
PROTEOMICS 15 ( 18) 3163 -3168

265
2015
Limits to robustness and reproducibility in the demarcation of operational taxonomic units

Thomas S. B. Schmidt , João F. Matias Rodrigues , Christian Mering
Environmental Microbiology 17 ( 5) 1689 -1706

107
2015
Microbiota-Derived Hydrogen Fuels Salmonella Typhimurium Invasion of the Gut Ecosystem

Lisa Maier , Rounak Vyas , Carmen Dolores Cordova , Helen Lindsay
Cell Host & Microbe 14 ( 6) 641 -651

93
2013
IFN-γ Hinders Recovery from Mucosal Inflammation during Antibiotic Therapy for Salmonella Gut Infection

Tamas Dolowschiak , Anna Angelika Mueller , Lynn Joanna Pisan , Rounak Feigelman
Cell Host & Microbe 20 ( 2) 238 -249

20
2016
The STRING database in 2021: customizable protein-protein networks, and functional characterization of user-uploaded gene/measurement sets.

Damian Szklarczyk , Annika L Gable , Katerina C Nastou , David Lyon
Nucleic Acids Research 49

2,423
2021
STRING v10: protein–protein interaction networks, integrated over the tree of life

Damian Szklarczyk , Andrea Franceschini , Stefan Wyder , Kristoffer Forslund
Nucleic Acids Research 43 447 -452

8,993
2015
eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences

Jaime Huerta-Cepas , Damian Szklarczyk , Kristoffer Forslund , Helen Cook
Nucleic Acids Research 44 286 -293

1,703
2016
STITCH 5: augmenting protein–chemical interaction networks with tissue and affinity data

Lars Juhl Jensen , Peer Bork , Michael Kuhn , Damian Szklarczyk
Nucleic Acids Research 44 380 -384

1,020
2016
Growth-restricting effects of siRNA transfections: a largely deterministic combination of off-target binding and hybridization-independent competition.

Neha Daga , Simone Eicher , Abhilash Kannan , Alain Casanova
Nucleic Acids Research 46 ( 18) 9309 -9320

4
2018
eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses.

Jaime Huerta-Cepas , Damian Szklarczyk , Davide Heller , Ana Hernández-Plaza
Nucleic Acids Research 47 309 -314

1,726
2019
The STRING database in 2017: quality-controlled protein-protein association networks, made broadly accessible.

Damian Szklarczyk , John H Morris , Helen Cook , Michael Kuhn
Nucleic Acids Research 45 0

6,027
2017
34
2007
10,544
2019
eggNOG v3. 0

Sean Powell , K Trachana , I Letunic , T Doerks
Nucleic Acids Research

2012
Comparative metagenomics of microbial communities

Susannah Green Tringe , Christian Von Mering , Arthur Kobayashi , Asaf A Salamov
Lawrence Berkeley National Laboratory

1,938
2004
Strain-Resolved Dynamics of the Lung Microbiome in Patients with Cystic Fibrosis.

Christian von Mering , Christian von Mering , Oliver Nolte , Florent Baty
Mbio 12 ( 2)

2021
STITCH 2: an interaction network database for small molecules and proteins

Michael Kuhn , Damian Szklarczyk , Andrea Franceschini , Monica Campillos
Nucleic Acids Research 38 552 -556

181
2010
Comparative analysis of environmental sequences: potential and challenges.

Konrad U Foerstner , Christian von Mering , Peer Bork
Philosophical Transactions of the Royal Society B 361 ( 1467) 519 -523

26
2006
The initiative on Model Organism Proteomes (iMOP) Session September 6, 2011, Geneva, Switzerland

Sabine P. Schrimpf , Christian von Mering , Emøke Bendixen , Joshua L. Heazlewood
PROTEOMICS 12 ( 3) 346 -350

4
2012
The HUPO initiative on Model Organism Proteomes, iMOP

Alexandra M. E. Jones , Ruedi Aebersold , Christian H. Ahrens , Rolf Apweiler
PROTEOMICS 12 ( 3) 340 -345

9
2012