High-accuracy long-read amplicon sequences using unique molecular identifiers with Nanopore or PacBio sequencing.

Rasmus H. Kirkegaard , Søren M. Karst , Mads Albertsen , Rob Knight
Nature Methods 18 ( 2) 165 -169

125
2021
Connecting structure to function with the recovery of over 1000 high-quality metagenome-assembled genomes from activated sludge using long-read sequencing.

Caitlin M Singleton , Francesca Petriglieri , Jannie M Kristensen , Rasmus H Kirkegaard
Nature Communications 12 ( 1) 2009 -2009

93
2021
The impact of immigration on microbial community composition in full-scale anaerobic digesters

Rasmus H Kirkegaard , Simon J McIlroy , Jannie M Kristensen , Marta Nierychlo
Scientific Reports 7 ( 1) 9343 -9343

66
2017
Exploring the upper pH limits of nitrite oxidation: diversity, ecophysiology, and adaptive traits of haloalkalitolerant Nitrospira

Anne Daebeler , Katharina Kitzinger , Hanna Koch , Craig W. Herbold
The ISME Journal 14 ( 12) 2967 -2979

36
2020
Peatland Acidobacteria with a dissimilatory sulfur metabolism

Bela Hausmann , Claus Pelikan , Craig W. Herbold , Stephan Köstlbacher
The ISME Journal 12 ( 7) 1729 -1742

90
2018
Novel prosthecate bacteria from the candidate phylum Acetothermia.

Liping Hao , Simon Jon McIlroy , Rasmus Hansen Kirkegaard , Søren Michael Karst
The ISME Journal 12 ( 9) 2225 -2237

18
2018
Unlinked rRNA genes are widespread among bacteria and archaea.

Tess E. Brewer , Mads Albertsen , Arwyn Edwards , Rasmus H. Kirkegaard
The ISME Journal 14 ( 2) 597 -608

13
2020
Novel syntrophic bacteria in full-scale anaerobic digesters revealed by genome-centric metatranscriptomics

Liping Hao , Thomas Yssing Michaelsen , Caitlin Margaret Singleton , Giulia Dottorini
The ISME Journal 14 ( 4) 906 -918

16
2020
A metagenome of a full-scale microbial community carrying out enhanced biological phosphorus removal.

Mads Albertsen , Lea Benedicte Skov Hansen , Aaron Marc Saunders , Per Halkjær Nielsen
The ISME Journal 6 ( 6) 1094 -1106

250
2012
‘Candidatus Competibacter’-lineage genomes retrieved from metagenomes reveal functional metabolic diversity

Simon J McIlroy , Mads Albertsen , Eva K Andresen , Aaron M Saunders
The ISME Journal 8 ( 3) 613 -624

94
2014
Metabolic model for the filamentous ‘Candidatus Microthrix parvicella’ based on genomic and metagenomic analyses

Simon Jon McIlroy , Rikke Kristiansen , Mads Albertsen , Søren Michael Karst
The ISME Journal 7 ( 6) 1161 -1172

61
2013
The activated sludge ecosystem contains a core community of abundant organisms.

Aaron M Saunders , Mads Albertsen , Jes Vollertsen , Per H Nielsen
The ISME Journal 10 ( 1) 11 -20

255
2016
A B-cell-associated gene signature classification of diffuse large B-cell lymphoma by NanoString technology.

Thomas Yssing Michaelsen , Julia Richter , Rasmus Froberg Brøndum , Wolfram Klapper
Blood Advances 2 ( 13) 1542 -1546

4
2018
Comparative Genome-Centric Analysis of Freshwater and Marine ANAMMOX Cultures Suggests Functional Redundancy in Nitrogen Removal Processes.

Muhammad Ali , Dario Rangel Shaw , Mads Albertsen , Pascal E. Saikaly
Frontiers in Microbiology 11 1637

27
2020
Expanded metabolic versatility of ubiquitous nitrite-oxidizing bacteria from the genus Nitrospira

Hanna Koch , Sebastian Lücker , Mads Albertsen , Katharina Kitzinger
Proceedings of the National Academy of Sciences of the United States of America 112 ( 36) 11371 -11376

402
2015
Characterization of a thaumarchaeal symbiont that drives incomplete nitrification in the tropical sponge Ianthella basta.

Florian U. Moeller , Nicole S. Webster , Craig W. Herbold , Faris Behnam
Environmental Microbiology 21 ( 10) 3831 -3854

38
2019
“Candidatus Propionivibrio aalborgensis”: A Novel Glycogen Accumulating Organism Abundant in Full-Scale Enhanced Biological Phosphorus Removal Plants

Mads Albertsen , Simon J. McIlroy , Mikkel Stokholm-Bjerregaard , Søren M. Karst
Frontiers in Microbiology 7 1033 -1033

84
2016
Culture-Independent Analyses Reveal Novel Anaerolineaceae as Abundant Primary Fermenters in Anaerobic Digesters Treating Waste Activated Sludge

Simon J McIlroy , Rasmus H Kirkegaard , Morten S Dueholm , Eustace Fernando
Frontiers in Microbiology 8 1134

136
2017