Text-mining approaches in molecular biology and biomedicine.

M KRALLINGER , R ERHARDT , A VALENCIA
Drug Discovery Today 10 ( 6) 439 -445

208
2005
Evaluation of chemical and gene/protein entity recognition systems at BioCreative V.5: the CEMP and GPRO patents tracks.

M. Perez , M.P. , Rabal , O.
Proceedings of the BioCreative V.5 Challenge Evaluation Workshop 3 -11

33
2017
Benchmarking biomedical text mining web servers at BioCreative V.5: the technical Interoperability and Performance of annotation Servers - TIPS track

Martin Pérez-Pérez , Gael Pérez-Rodríguez , Aitor Blanco-Míguez , Florentino Fdez-Riverola
Proceedings of the BioCreative V.5 Challenge Evaluation Workshop 19 -27

15
2017
FUN-L: Gene prioritization for RNAi screens

Jonathan G Lees , Jean-Karim Heriche , Ian Morilla , Jose M Fernandez
Bioinformatics ( pii) btv073 -btv073

10
2015
Refactoring corpora

Helen L Johnson , William A Baumgartner Jr , Martin Krallinger , K Bretonnel Cohen
Proceedings of the HLT-NAACL BioNLP workshop on linking natural language and biology 116 -117

4
2006
Overview of the COVID-19 Text Mining Tool Interactive Demo Track in BioCreative VII

Arighi CN. Chatr-aryamontri A , Hirschman L , Ross KE , Oughtred R
Proceedings of the seventh BioCreative challenge evaluation workshop

2021
Text mining and protein annotations: the construction and use of protein description sentences.

Martin Krallinger , Rainer Malik , Alfonso Valencia
Genome Informatics 17 ( 2) 121 -130

17
2006
Esfuerzos para fomentar la minería de textos en biomedicina más allá del inglés: el plan estratégico nacional español para las tecnologías del lenguaje

Ander Intxaurrondo , Martin Krallinger , Marta Villegas , Jesus Santamaria
Procesamiento Del Lenguaje Natural 59 ( 59) 141 -144

2017
Finding Mentions of Abbreviations and Their Definitions in Spanish Clinical Cases: The BARR2 Shared Task Evaluation Results.

Ander Intxaurrondo , Montserrat Marimon , Aitor Gonzalez-Agirre , Jose Antonio Lopez-Martin
IberEval@SEPLN 280 -289

5
2018
OGER: OntoGene’s Entity Recogniser in the BeCalm TIPS Task

Florentino Fdez-Riverola , Martin Krallinger , Lenz Furrer , Salvador Capella-Gutierrez
Furrer, Lenz; Rinaldi, Fabio (2017). OGER: OntoGene’s Entity Recogniser in the BeCalm TIPS Task. In: BioCreative V.5 Challenge Evaluation Workshop, Barcelona, Spain, 26 April 2017 - 27 April 2017, 175-182. 175 -182

6
2017
Automatic De-identification of Medical Texts in Spanish: the MEDDOCAN Track, Corpus, Guidelines, Methods and Evaluation of Results.

Aitor Gonzalez-Agirre , Ander Intxaurrondo , Martin Krallinger , Montserrat Marimon
IberLEF@SEPLN 618 -638

23
2019
Overview of Automatic Clinical Coding: Annotations, Guidelines, and Solutions for non-English Clinical Cases at CodiEsp Track of CLEF eHealth 2020.

Aitor Gonzalez-Agirre , Martin Krallinger , Antonio Miranda-Escalada , Jordi Armengol-Estapé
CLEF (Working Notes)

68
2020
Informe del GTM sobre Datos e información en la epidemia COVID-19 y propuestas para la evolución digital del sistema de salud

Pedro Jordano , Ramón López de Mántaras , Martin Krallinger , Alfonso Gordaliza
Ministerio de Ciencia e Innovación (España)

2020
Applications of Text Mining in Molecular Biology, from Name Recognition to Protein Interaction Maps.

Martin Krallinger , Alfonso Valencia
Data Analysis and Visualization in Genomics and Proteomics 41 -59

3
2005
FragKB: Structural and Literature Annotation Resource of Conserved Peptide Fragments and Residues

Ashish V. Tendulkar , Martin Krallinger , Victor de la Torre , Gonzalo López
PLoS ONE 5 ( 3) e9679

5
2010
Information retrieval and text mining technologies for chemistry

Martin Krallinger , Obdulia Rabal , Anália Lourenço , Julen Oyarzabal
Chemical Reviews 117 ( 12) 7673 -7761

226
2017