NetAtlas: a Cytoscape plugin to examine signaling networks based on tissue gene expression.

John B. Hogenesch , Russell S. Thomas , John R. Walker , Longlong Yang
in Silico Biology 8 ( 1) 47 -52

10
2008
Methods and compositions for modulating circadian rhythm

John B. Hogenesch , Trey Kyle Sato , Steve A. Kay

5
2004
Erratum: Applications of a rat multiple tissue gene expression data set (Genome Research (2004) vol. 14 (742-749))

John B. Hogenesch , Anu Kinnunen , Graeme Bilbe , Hilmar Lapp
Genome Research 14 ( 7)

2004
Transcriptional regulation of, and by, the clock

John B. Hogenesch , John B. Hogenesch , Peter McNamara , Satchidananda Panda
Proceedings of Annual Meeting of the Physiological Society of Japan Proceedings of Annual Meeting of the Physiological Society of Japan

2005
Methods for treating circadian rhythm phase disturbances

Steve A. Kay , John B. Hogenesch , Satchidananda Panda , Ignacio Provincio

6
2003
mTOR signaling regulates central and peripheral circadian clock function.

Chidambaram Ramanathan , Nimish D. Kathale , Dong Liu , Choogon Lee
PLOS Genetics 14 ( 5)

77
2018
Categorically Distinct Acute Stressors Elicit Dissimilar Transcriptional Profiles in the Paraventricular Nucleus of the Hypothalamus

Teresa M. Reyes , John R. Walker , Casey DeCino , John B. Hogenesch
The Journal of Neuroscience 23 ( 13) 5607 -5616

184
2003
Computational and experimental insights into the circadian effects of SIRT1.

Panagiota T Foteinou , Anand Venkataraman , Lauren J Francey , Ron C Anafi
Proceedings of the National Academy of Sciences of the United States of America 115 ( 45) 11643 -11648

48
2018
Cisplatin-DNA adduct repair of transcribed genes is controlled by two circadian programs in mouse tissues

Yanyan Yang , Ogun Adebali , Gang Wu , Christopher P. Selby
Proceedings of the National Academy of Sciences of the United States of America 115 ( 21) 201804493

36
2018
Population-level rhythms in human skin with implications for circadian medicine

Gang Wu , Marc D. Ruben , Robert E. Schmidt , Lauren J. Francey
Proceedings of the National Academy of Sciences of the United States of America 115 ( 48) 12313 -12318

83
2018
The Gene Wiki: community intelligence applied to human gene annotation

Jon W. Huss , Pierre Lindenbaum , Michael Martone , Donabel Roberts
Nucleic Acids Research 38 633 -639

77
2010
Wnt ligands signal in a cooperative manner to promote foregut organogenesis

Mayumi F. Miller , Ethan David Cohen , Julie E. Baggs , Min Min Lu
Proceedings of the National Academy of Sciences of the United States of America 109 ( 38) 15348 -15353

42
2012
Characterization of a Subset of the Basic-Helix-Loop-Helix-PAS Superfamily That Interacts with Components of the Dioxin Signaling Pathway

John B. Hogenesch , William K. Chan , Victoria H. Jackiw , R. Clark Brown
Journal of Biological Chemistry 272 ( 13) 8581 -8593

450
1997
Bioinformatic analysis of circadian gene oscillation in mouse aorta

R Daniel Rudic , Peter McNamara , Dermot Reilly , Tilo Grosser
Circulation 112 ( 17) 2716 -2724

113
2005
A detailed graphical and computational model of the mammalian renal circadian clock

Jessica R. Ivy , Barbara Shih , John B. Hogenesch , John J. Mullins
bioRxiv 795906

1
2019
Circadian clock proteins regulate neuronal redox homeostasis and neurodegeneration

Erik S. Musiek , Miranda M. Lim , Guangrui Yang , Adam Q. Bauer
Journal of Clinical Investigation 123 ( 12) 5389 -5400

239
2013
Ubiquitin ligase Siah2 regulates RevErbα degradation and the mammalian circadian clock

Jason P. DeBruyne , Julie E. Baggs , Trey K. Sato , John B. Hogenesch
Proceedings of the National Academy of Sciences of the United States of America 112 ( 40) 12420 -12425

19
2015
Understanding systems-level properties: timely stories from the study of clocks

John B. Hogenesch , Hiroki R. Ueda
Nature Reviews Genetics 12 ( 6) 407 -416

110
2011
A Comparison of the Celera and Ensembl Predicted Gene Sets Reveals Little Overlap in Novel Genes

John B. Hogenesch , Keith A. Ching , Serge Batalov , Andrew I. Su
Cell 106 ( 4) 413 -415

177
2001