IMG-ABC: An Atlas of Biosynthetic Gene Clusters to Fuel the Discovery of Novel Secondary Metabolites
Peter Cimermancic , Anna Ratner , Michael Fischbach , Ken Chu
2014
2014
Genetic interaction mapping informs integrative structure determination of protein complexes.
Hannes Braberg , Ignacia Echeverria , Stefan Bohn , Peter Cimermancic
Science 370 ( 6522)
6
2020
antiSMASH: rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences
Marnix H. Medema , Kai Blin , Peter Cimermancic , Victor de Jager
Nucleic Acids Research 39 ( 2) 339 -346
1,711
2011
Scoring Large‐Scale Affinity Purification Mass Spectrometry Datasets with MiST
Erik Verschueren , John Von Dollen , Peter Cimermancic , Natali Gulbahce
Current protocols in human genetics 49 ( 1)
34
2015
High-quality MS/MS spectrum prediction for data-dependent and data-independent acquisition data analysis.
Shivani Tiwary , Roie Levy , Petra Gutenbrunner , Favio Salinas Soto
Nature Methods 16 ( 6) 519 -525
80
2019
Discovery and Characterization of Gut Microbiota Decarboxylases that Can Produce the Neurotransmitter Tryptamine
Brianna B. Williams , Andrew H. Van Benschoten , Peter Cimermancic , Mohamed S. Donia
Cell Host & Microbe 16 ( 4) 495 -503
399
2014
Purification and characterization of HIV–human protein complexes
Stefanie Jäger , Natali Gulbahce , Peter Cimermancic , Joshua Kane
Methods 53 ( 1) 13 -19
46
2011
Vif hijacks CBF-β to degrade APOBEC3G and promote HIV-1 infection
Stefanie Jäger , Dong Young Kim , Judd F. Hultquist , Keisuke Shindo
Nature 481 ( 7381) 371 -375
259
2012
Global landscape of HIV-human protein complexes
Stefanie Jäger , Peter Cimermancic , Natali Gulbahce , Jeffrey R. Johnson
Nature 481 ( 7381) 365 -370
505
2012
The proteasome-interacting Ecm29 protein disassembles the 26S proteasome in response to oxidative stress.
Xiaorong Wang , Ilan E. Chemmama , Clinton Yu , Alexander Huszagh
Journal of Biological Chemistry 292 ( 39) 16310 -16320
50
2017
Architecture of the Human and Yeast General Transcription and DNA Repair Factor TFIIH
Jie Luo , Peter Cimermancic , Shruthi Viswanath , Christopher C. Ebmeier
Molecular Cell 59 ( 5) 794 -806
70
2015
Immunoproteasome functions explained by divergence in cleavage specificity and regulation
Michael B Winter , Florencia La Greca , Shirin Arastu-Kapur , Francesco Caiazza
eLife 6
31
2017
CryptoSite: Expanding the Druggable Proteome by Characterization and Prediction of Cryptic Binding Sites.
Peter Cimermancic , Patrick Weinkam , T. Justin Rettenmaier , Leon Bichmann
Journal of Molecular Biology 428 ( 4) 709 -719
88
2016
Modeling of Protein Complex Architectures using Combinatorial Genetic Perturbations
Ignacia Echeverria , Hannes Braberg , Peter Cimermancic , Riccardo Pellarin
Biophysical Journal 116 ( 3)
2019
A machine learning-based approach for the inference of immunotherapy biomarker status in lung adenocarcinoma from hematoxylin and eosin (H&E) histopathology images.
Cory Batenchuk , Huan-Wei Chang , Peter Cimermancic , Eunhee S. Yi
Journal of Clinical Oncology 38 3122 -3122
2020
Insights into secondary metabolism from a global analysis of prokaryotic biosynthetic gene clusters.
Peter Cimermancic , Marnix H. Medema , Jan Claesen , Kenji Kurita
Cell 158 ( 2) 412 -421
495
2014
A systematic analysis of biosynthetic gene clusters in the human microbiome reveals a common family of antibiotics
Mohamed S. Donia , Peter Cimermancic , Christopher J. Schulze , Laura C. Wieland Brown
Cell 158 ( 6) 1402 -1414
560
2014
Integration of machine learning and pan-genomics expands the biosynthetic landscape of RiPP natural products
Alexander M. Kloosterman , Peter Cimermancic , Somayah S. Elsayed , Chao Du
bioRxiv
3
2020
Assessing Exhaustiveness of Stochastic Sampling for Integrative Modeling of Macromolecular Structures
Shruthi Viswanath , Ilan E. Chemmama , Peter Cimermancic , Andrej Sali
Biophysical Journal 113 ( 11) 2344 -2353
32
2017