A human MAP kinase interactome
Sourav Bandyopadhyay , Chih-yuan Chiang , Jyoti Srivastava , Merril Gersten
Nature Methods 7 ( 10) 801 -805
169
2010
A travel guide to Cytoscape plugins
Rintaro Saito , Michael E Smoot , Keiichiro Ono , Johannes Ruscheinski
Nature Methods 9 ( 11) 1069 -1076
1,367
2012
Deep Semantic Protein Representation for Annotation, Discovery, and Engineering
Ariel S Schwartz , Gregory J Hannum , Zach R Dwiel , Michael E Smoot
bioRxiv 365965
9
2018
Improving pairwise sequence alignment accuracy using near-optimal protein sequence alignments.
Michael L Sierk , Michael E Smoot , Ellen J Bass , William R Pearson
BMC Bioinformatics 11 ( 1) 146 -146
11
2010
Cytoscape 2.8: new features for data integration and network visualization
Michael E Smoot , Keiichiro Ono , Johannes Ruscheinski , Peng-Liang Wang
Bioinformatics 27 ( 3) 431 -432
4,666
2011
Visualization of near-optimal sequence alignments
M. E. Smoot , S. A. Guerlain , W. R. Pearson
Bioinformatics 20 ( 6) 953 -958
9
2004
Cytoscape 2.8
M. E. Smoot , K. Ono , J. Ruscheinski , P.-L. Wang
Bioinformatics 27 ( 3) 431 -432
3,186
2011
Near optimal solutions navigator
M.E. Smoot , W.R. Pearson , S.A. Guerlain
systems, man and cybernetics 5 4
2002
Analyzing, exploring, and visualizing near-optimal protein sequence alignments
Michael Elliott Smoot
University of Virginia
2005
Cytoscape: the network visualization tool for GenomeSpace workflows.
Barry Demchak , Tim Hull , Michael Reich , Ted Liefeld
F1000Research 3 151 -151
86
2014
Integration of biological networks and gene expression data using Cytoscape.
Melissa S Cline , Michael Smoot , Ethan Cerami , Allan Kuchinsky
Nature Protocols 2 ( 10) 2366 -2382
2,572
2007
The Protein Architecture of Human Secretory Vesicles Reveals Differential Regulation of Signaling Molecule Secretion by Protein Kinases
Steven J. Bark , Jill Wegrzyn , Laurent Taupenot , Michael Ziegler
PLOS ONE 7 ( 8)
14
2012
Versatile and open software for comparing large genomes
Stefan Kurtz , Adam Phillippy , Arthur L Delcher , Michael Smoot
Genome Biology 5 ( 2) 1 -9
5,047
2004
Fast Statistical Alignment
Robert K. Bradley , Adam Roberts , Michael Smoot , Sudeep Juvekar
PLoS Computational Biology 5 ( 5) e1000392
386
2009
Assembling global maps of cellular function through integrative analysis of physical and genetic networks
Rohith Srivas , Gregory Hannum , Johannes Ruscheinski , Keiichoro Ono
Nature Protocols 6 ( 9) 1308 -1323
23
2011
Network visualization and data analysis using Cytoscape
Michael Smoot , Trey Ideker
中国化学会计算机化学专业委员会. 第十届全国计算 (机) 化学学术会议论文摘要集
1
Cytoscape: the network visualization tool for GenomeSpace workflows [v2; ref status: indexed
Barry Demchak , Tim Hull , Michael Reich , Ted Liefeld
2014
workflows [version 1; referees: 3 approved]
Barry Demchak , Tim Hull , Michael Reich , Ted Liefeld
2014
GenomeSpace workflows [version 2; referees: 3 approved]
Barry Demchak , Tim Hull , Michael Reich , Ted Liefeld
2014
Facilitating secure execution of external workflows for genomic sequencing diagnostics
Michael Smoot , Jeremy Ward , Adam French , Russell Taylor
2023