Daniel Marbach
机构: Roche Pharma Research and Early Development, Basel, Switzerland
每年引用次数
引用次数
引用: 7,774
H-指数: 21
I10-指数 : 30
出版物: 58
Chromatin 3D interactions mediate genetic effects on gene expression
O Delaneau , M Zazhytska , C Borel , G Giannuzzi
European Journal of Human Genetics 27 1044 -1045
2019
Local regulatory networks across two tissues and applications to analyze rare non-coding variants
A Reymond , O Delaneau , M Zazhytska , K Popadin
European Journal of Human Genetics 26 44 -44
2018
Open Community Challenge Reveals Molecular Network Modules with Key Roles in Diseases.
Sarvenaz Choobdar , Mehmet E Ahsen , Jake Crawford , Mattia Tomasoni
Nature Methods 16 ( 9) 843 -852
28
2019
Gerald Quon
G Quon , M Grzadkowski , D Marbach , M Claussnitzer
Consortium, D. Wisdom of crowds for robust gene network inference
D Marbach , JC Costello , R Kuffner , NM Vega
Nature Methods 9 ( 8)
5
23
LOCAL REGULATORY NETWORKS ACROSS TWO TISSUES AND APPLICATIONS TO ANALYZE RARE NON-CODING VARIANTS
O Delaneau , K Popadin , M Zazhytska , S Kumar
Clinical Chemistry and Laboratory Medicine 55
2017
Evolutionary reverse engineering of gene networks
Daniel Marbach
EPFL
5
2009
Stochastic Simulations for DREAM4
Thomas Schaffter , Daniel Marbach
2009
GeneNetWeaver 3.0: realistic benchmark generation and performance profiling of network inference methods
Thomas Schaffter , Dario Floreano , Kellis Manolis , Daniel Marbach
3rd annual joint conference on Systems Biology, Regulatory Genomics, and Reverse Engineering Challenges
2010
Scalable Reverse Engineering of Nonlinear Gene Networks
Thomas Schaffter , Dario Floreano , Claudio Mattiussi , Daniel Marbach
Exhibition of the Master projects, EPFL
2008
Network deconvolution as a general method to distinguish direct dependencies in networks
Manolis Kellis , Manolis Kellis , Muriel Médard , Soheil Feizi
PMC
298
2013
MONET: MOdularising NEtwork Toolbox for mining of molecular and genetic networks
Sarvenaz Choobdar , Sarvenaz Choobdar , Sergio Gómez , Sven Bergmann
bioRxiv 611418
2019
Assessment of network module identification across complex diseases.
Sarvenaz Choobdar , Mehmet E Ahsen , Jake Crawford , Mattia Tomasoni
Nature Methods 16 ( 9) 843 -852
179
2019
Fast and Rigorous Computation of Gene and Pathway Scores from SNP-Based Summary Statistics.
David Lamparter , Daniel Marbach , Rico Rueedi , Zoltán Kutalik
PLOS Computational Biology 12 ( 1)
219
2016
Wisdom of crowds for robust gene network inference
Daniel Marbach , James C Costello , Robert Küffner , Nicole M Vega
Nature Methods 9 ( 8) 796 -804
1,188
2012
Gene-set enrichment with regularized regression
Tao Fang , Iakov Davydov , Daniel Marbach , Jitao David Zhang
bioRxiv 659920
1
2019
Genome-Wide Association between Transcription Factor Expression and Chromatin Accessibility Reveals Regulators of Chromatin Accessibility.
David Lamparter , Daniel Marbach , Rico Rueedi , Sven Bergmann
PLOS Computational Biology 13 ( 1)
19
2017
sbv IMPROVER diagnostic signature challenge: Scoring strategies
Raquel Norel , Erhan Bilal , Nathalie Conrad-Chemineau , Richard Bonneau
Systems Biomedicine 1 ( 4) 208 -216
6
2013
Verification of systems biology research in the age of collaborative competition
Pablo Meyer , Leonidas G Alexopoulos , Thomas Bonk , Andrea Califano
Nature Biotechnology 29 ( 9) 811 -815
72
2011
MONET: a toolbox integrating top-performing methods for network modularization
Mattia Tomasoni , Sergio Gómez , Jake Crawford , Weijia Zhang
Bioinformatics 36 ( 12) 3920 -3921
4
2020