Comparison of archaeal and bacterial genomes: computer analysis of protein sequences predicts novel functions and suggests a chimeric origin for the archaea.

Eugene V Koonin , Arcady R Mushegian , Michael Y Galperin , D Roland Walker
Molecular Microbiology 25 ( 4) 619 -637

282
1997
1 – The Beginning of Computational Genomics

Arcady R. Mushegian
Foundations of Comparative Genomics 1 -4

2007
2007
Homology: Can We Get It Right?

Arcady R. Mushegian
Foundations of Comparative Genomics 24 -32

2007
2007
6 – The Second Fact of Comparative Genomics: Functional Convergence at the Molecular Level

Arcady R. Mushegian
Foundations of Comparative Genomics 70 -90

2007
Getting Ready for the Era of Comparative Genomics: The Importance of Viruses

Arcady R. Mushegian
Foundations of Comparative Genomics 33 -50

2007
2 – Finding Sequence Similarities

Arcady R. Mushegian
Foundations of Comparative Genomics 5 -23

1
2007
Phylogenetic Inference and the Era of Complete Genomes

Arcady R. Mushegian
Foundations of Comparative Genomics 151 -177

1
2007
10 – How Many Protein Families are There?

Arcady R. Mushegian
Foundations of Comparative Genomics 139 -150

1
2007
12 – Two Stories about Evolution

Arcady R. Mushegian
Foundations of Comparative Genomics 178 -199

2007
Structural Genomics: What Does It Tell Us about Life?

Arcady R. Mushegian
Foundations of Comparative Genomics 118 -138

2007
Prediction of Function and Reconstruction of Metabolism: Post-Homology Approaches

Arcady R. Mushegian
Foundations of Comparative Genomics 105 -117

2007
13 – Minimal and Ancestral Genomes

Arcady R. Mushegian
Foundations of Comparative Genomics 200 -223

2007
14 – Comparative Genomics and Systems Biology

Arcady R. Mushegian
Foundations of Comparative Genomics 224 -237

1
2007
Correction to: Binomial nomenclature for virus species: a consultation.

Stuart G. Siddell , Peter J. Walker , Elliot J. Lefkowitz , Arcady R. Mushegian
Archives of Virology 165 ( 5) 1263 -1264

2
2020
Possibility and Challenges of Conversion of Current Virus Species Names to Linnaean Binomials

Thomas S. Postler , Anna N. Clawson , Gaya K. Amarasinghe , Christopher F. Basler
Systematic Biology 66 ( 3) 463 -473

8
2016
The Proposed Plant Connexin Is a Protein Kinase-Like Protein [with Reply]

Arcady R. Mushegian , Eugene V. Koonin , Melvin Schindler
The Plant Cell 5 ( 9) 998

1993
A putative nucleic acid-binding domain in Bloom's and Werner's syndrome helicases

Vladimir Morozov , Arcady R. Mushegian , Eugene V. Koonin , Peer Bork
Trends in Biochemical Sciences 22 ( 11) 417 -418

138
1997