Chromatin Domains: The Unit of Chromosome Organization

Jesse R. Dixon , David U. Gorkin , Bing Ren
Molecular Cell 62 ( 5) 668 -680

427
2016
A CRISPR Connection between Chromatin Topology and Genetic Disorders.

Bing Ren , Jesse R. Dixon
Cell 161 ( 5) 955 -957

7
2015
A Non-Canonical BRD9-containing BAF Chromatin Remodeling Complex Regulates Naive Pluripotency in Mouse Embryonic Stem Cells

Jovylyn Gatchalian , Shivani Malik , Josephine Ho , Dong-Sung Lee
Nature Communications 9 ( 1) 5139

60
2018
Simultaneous profiling of 3D genome structure and DNA methylation in single human cells

Dong-Sung Lee , Chongyuan Luo , Jingtian Zhou , Sahaana Chandran
Nature Methods 16 ( 10) 999 -1006

141
2019
Promoter-proximal CTCF binding promotes distal enhancer-dependent gene activation

Naoki Kubo , Haruhiko Ishii , Xiong Xiong , Simona Bianco
Nature Structural & Molecular Biology 28 ( 2) 152 -161

117
2021
Complete haplotype phasing of the MHC and KIR loci with targeted HaploSeq

Siddarth Selvaraj , Anthony D. Schmitt , Jesse R. Dixon , Bing Ren
BMC Genomics 16 ( 1) 900 -900

15
2015
A high-resolution map of the three-dimensional chromatin interactome in human cells

Fulai Jin , Yan Li , Jesse R. Dixon , Siddarth Selvaraj
Nature 503 ( 7475) 290 -294

1,197
2013
Topological domains in mammalian genomes identified by analysis of chromatin interactions

Jesse R. Dixon , Siddarth Selvaraj , Feng Yue , Audrey Kim
Nature 485 ( 7398) 376 -380

6,047
2012
Dynamic regulation of histone modifications and long-range chromosomal interactions during postmitotic transcriptional reactivation

Hyeseon Kang , Maxim N. Shokhirev , Zhichao Xu , Sahaana Chandran
Genes & Development 34 913 -930

44
2020
2019
Allelic reprogramming of 3D chromatin architecture during early mammalian development

Zhenhai Du , Hui Zheng , Bo Huang , Rui Ma
Nature 547 ( 7662) 232 -235

360
2017
Integrative detection and analysis of structural variation in cancer genomes

Jesse R. Dixon , Jie Xu , Vishnu Dileep , Ye Zhan
Nature Genetics 50 ( 10) 1388 -1398

235
2018
Mapping cis-regulatory chromatin contacts in neural cells links neuropsychiatric disorder risk variants to target genes

Michael Song , Xiaoyu Yang , Xingjie Ren , Lenka Maliskova
Nature Genetics 51 ( 8) 1252 -1262

119
2019
Somatic mutation distributions in cancer genomes vary with three-dimensional chromatin structure

Kadir C. Akdemir , Victoria T. Le , Justin M. Kim , Sarah Killcoyne
Nature Genetics 52 ( 11) 1178 -1188

10
2020
Robust single-cell Hi-C clustering by convolution- and random-walk-based imputation.

Jingtian Zhou , Jianzhu Ma , Yusi Chen , Chuankai Cheng
Proceedings of the National Academy of Sciences of the United States of America 116 ( 28) 14011 -14018

30
2019
Comparing 3D Genome Organization in Multiple Species Using Phylo-HMRF

Yang Yang , Yang Zhang , Bing Ren , Jesse R. Dixon
Cell systems 8 ( 6) 494

23
2019
Chromatin architecture reorganization during stem cell differentiation

Jesse R. Dixon , Inkyung Jung , Siddarth Selvaraj , Yin Shen
Nature 518 ( 7539) 331 -336

1,493
2015
CRISPR Reveals a Distal Super-Enhancer Required for Sox2 Expression in Mouse Embryonic Stem Cells

Yan Li , Chloe M. Rivera , Haruhiko Ishii , Fulai Jin
PLoS ONE 9 ( 12) e114485 -114485

117
2014
Involvement of a Mitochondrial Phosphatase in the Regulation of ATP Production and Insulin Secretion in Pancreatic β Cells

David J. Pagliarini , Sandra E. Wiley , Michelle E. Kimple , Jesse R. Dixon
Molecular Cell 19 ( 2) 197 -207

120
2005
Incorporation of a nucleoside analog maps genome repair sites in postmitotic human neurons

Dylan A Reid , Patrick J Reed , Johannes CM Schlachetzki , Ioana I Nitulescu
Science 372 ( 6537) 91 -94

1
2021