Mahmoud Moradi
机构: Department of Chemistry and Biochemistry, University of Arkansas
主页: uark.edu
每年引用次数
引用次数
引用: 1,283
H-指数: 20
I10-指数 : 30
出版物: 143
Thermodynamic and Kinetic Characterization of Protein Conformational Dynamics within a Riemannian Framework
Mahmoud Moradi , Curtis Goolsby , Ashkan Fakharzadeh
bioRxiv
2021
Comparing the Dynamic Differences between X-ray and Cryo-EM Structures of Cannabinoid Receptor 1 using Molecular Dynamics Simulations
Mahmoud Moradi , Vivek Govind Kumar , Adithya Polasa , Ugochi Isu
Biophysical Journal 120 ( 3)
2021
Investigation of Cyclic AMP Binding Interactions with Isolated Cyclic Nucleotide Binding Domain of HCN1 Channel using Atomistic Molecular Dynamics Simulations at Microsecond Timescale
Mahmoud Moradi , Matthew G. Brownd , Adithya Polasa
Biophysical Journal 120 ( 3)
2021
Differential Dynamic Behavior of Prefusion Spike Glycoproteins of Sars Coronaviruses 1 and 2
Mahmoud Moradi , Vivek Govind Kumar , Dylan S. Ogden , Ugochi Isu
Biophysical Journal 120 ( 3)
2021
Conformational Transition Pathway of GkPOT
Mahmoud Moradi , Kalyan Immadisetty , Curtis Goolsby , Dylan Ogden
Biophysical Journal 120 ( 3)
2021
Integrating Molecular Dynamics and smFRET Data to Study the Conformational Ensemble of the C-Terminus of Albino3 Protein
Mercede Furr , Mahmoud Moradi , Colin D. Heyes , Vivek Govind Kumar
Biophysical Journal 120 ( 3)
2021
Molecular Dynamics Investigation of the Influenza Hemagglutinin Conformational Changes
Mahmoud Moradi , Vivek Govind Kumar , Shadi Asadian Ghahfarokhi
Biophysical Journal 120 ( 3)
2021
Developing Efficient Transfer Free Energy Calculation Methods for Hydrophobicity Predictions
Mahmoud Moradi , Seyed Hamid Tabari , Adithya Polasa
Biophysical Journal 120 ( 3)
2021
An Investigation of the Conformational Dynamics of ABC Exporter PCAT1 using Microsecond-Level MD Simulations
Mahmoud Moradi , Vivek Govind Kumar , Dylan S. Ogden
Biophysical Journal 120 ( 3)
2021
An Investigation of the Disulfide Bridge Formation of a Thylakoid Protease using Nanosecond-Level MD Simulations
Mahmoud Moradi , Vivek Govind Kumar , Adithya Polasa , Alaa El-Khouly
Biophysical Journal 120 ( 3)
2021
Computational Elucidation of Recombinant Fusion Protein Effect on Peptide-Directed Nanoparticles
Robert Beitle , Mahmoud Moradi , Alireza Abbaspourrad , Adithya Polasa
bioRxiv
2021
A Riemannian Framework for Tackling Large-Scale Conformational Changes of Proteins using All-ATOM Molecular Dynamics Simulations
Mahmoud Moradi
Biophysical Journal 110 ( 3) 643a
2016
Characterizing the Molecular Mechanism of the Histidine Switch Model in Influenza Virus Hemagglutinin
Mohamad R. Kalani , Abdolvahab Moradi , Mahmoud Moradi , Emad Tajkhorshid
Biophysical Journal 104 ( 2) 68a
2013
Characterizing a Histidine Switch Controlling pH-Dependent Conformational Changes of the Influenza Virus Hemagglutinin
Mohamad R. Kalani , Abdulvahab Moradi , Mahmoud Moradi , Emad Tajkhorshid
Biophysical Journal 105 ( 4) 993 -1003
16
2013
Effective Riemannian Diffusion Model for Conformational Dynamics of Biomolecular Systems.
Ashkan Fakharzadeh , Mahmoud Moradi
Journal of Physical Chemistry Letters 7 ( 24) 4980 -4987
9
2016
Calculating relative transition rates with driven nonequilibrium simulations
Mahmoud Moradi , Celeste Sagui , Christopher Roland
Chemical Physics Letters 518 109 -113
12
2011
What Can and Cannot Be Learned from Molecular Dynamics Simulations of Bacterial Proton-Coupled Oligopeptide Transporter GkPOT?
Kalyan Immadisetty , Jeevapani Hettige , Mahmoud Moradi
Journal of Physical Chemistry B 121 ( 15) 3644 -3656
13
2017
Advances in Atomic-Level Simulations of Large-Scale Functional Motions of Membrane Transporters
Emad Tajkhorshid , Mahmoud Moradi , Jing Li , Po-Chao Wen
Biophysical Journal 108 ( 2)
2015
Characterizing Conformational Ensemble and Free Energy Landscape of ABC Exporters using a Novel System-Specific Sampling Approach
Mahmoud Moradi , Emad Tajkhorshid
Biophysical Journal 106 ( 2) 7 -9
2014
Are Long-Range Structural Correlations Behind the Aggregration Phenomena of Polyglutamine Diseases?
Mahmoud Moradi , Volodymyr Babin , Christopher Roland , Celeste Sagui
PLoS Computational Biology 8 ( 4) e1002501
11
2012