Next Generation Proteomic Pipeline for Chromosome-based Proteomic Research Using NeXtProt and GENCODE databases

Heeyoun Hwang , Gun Wook Park , Ji Yeong Park , Hyun Kyoung Lee
Journal of Proteome Research 16 ( 12) 4425 -4434

9
2017
Global site-specific N-glycosylation analysis of HIV envelope glycoprotein.

Liwei Cao , Jolene K. Diedrich , Daniel W. Kulp , Matthias Pauthner
Nature Communications 8 ( 1) 14954

115
2017
Global site-specific analysis of glycoprotein N-glycan processing

Liwei Cao , Jolene K Diedrich , Yuanhui Ma , Nianshuang Wang
Nature Protocols 13 ( 6) 1196 -1212

65
2018
Integrated Proteomic Pipeline Using Multiple Search Engines for a Proteogenomic Study with a Controlled Protein False Discovery Rate.

Gun Wook Park , Heeyoun Hwang , Kwang Hoe Kim , Ju Yeon Lee
Journal of Proteome Research 15 ( 11) 4082 -4090

22
2016
Chromosome-Based Proteomic Study for Identifying Novel Protein Variants from Human Hippocampal Tissue Using Customized neXtProt and GENCODE Databases

Heeyoun Hwang , Gun Wook Park , Kwang Hoe Kim , Ju Yeon Lee
Journal of Proteome Research 14 ( 12) 5028 -5037

4
2015
PASS-DIA: A Data-Independent Acquisition Approach for Discovery Studies.

Dong-Gi Mun , Santosh Renuse , Mayank Saraswat , Anil Madugundu
Analytical Chemistry 92 ( 21) 14466 -14475

15
2020
Differential processing of HIV envelope glycans on the virus and soluble recombinant trimer

Liwei Cao , Matthias Pauthner , Raiees Andrabi , Kimmo Rantalainen
Nature Communications 9 ( 1) 3693

2018
Calcium Signaling through CaMKII Regulates Hepatic Glucose Production in Fasting and Obesity

Lale Ozcan , Catherine C.L. Wong , Gang Li , Tao Xu
Cell Metabolism 15 ( 5) 739 -751

207
2012
Identification of Long-Lived Proteins Reveals Exceptional Stability of Essential Cellular Structures

Brandon H. Toyama , Jeffrey N. Savas , Sung Kyu Park , Michael S. Harris
Cell 154 ( 5) 971 -982

317
2013
Do perineuronal nets stabilize the engram of a synaptic circuit?

Varda Lev-Ram , Sakina P Lemieux , Thomas J Deerinck , Eric A Bushong
BioRxiv 2023.04. 09.536164 -2023.04. 09.536164

5
2023
Large-Scale Differential Proteome Analysis in Plasmodium falciparum under Drug Treatment

Judith Helena Prieto , Sasa Koncarevic , Sung Kyu Park , John Yates
PLoS ONE 3 ( 12) e4098 -279

62
2008
Census for Proteome Quantification

Sung Kyu Park , John R. Yates
Current protocols in human genetics 29 ( 1)

24
2010
A quantitative analysis software tool for mass spectrometry–based proteomics

Sung Kyu Park , John D Venable , Tao Xu , John R Yates
Nature Methods 5 ( 4) 319 -322

322
2008
Comparisons of Mass Spectrometry Compatible Surfactants for Global Analysis of the Mammalian Brain Proteome

Emily I. Chen , Daniel McClatchy , Sung Kyu Park , John R. Yates III
Analytical Chemistry 80 ( 22) 8694 -8701

66
2008
Automatic validation of phosphopeptide identifications from tandem mass spectra.

Bingwen Lu , Cristian Ruse , Tao Xu , Sung Kyu Park
Analytical Chemistry 79 ( 4) 1301 -1310

105
2007
Optimizing TiO2-based phosphopeptide enrichment for automated multidimensional liquid chromatography coupled to tandem mass spectrometry

Greg T. Cantin , Teresa R. Shock , Sung Kyu Park , Hiten D. Madhani
Analytical Chemistry 79 ( 12) 4666 -4673

123
2007
Relative quantification of stable isotope labeled peptides using a linear ion trap-Orbitrap hybrid mass spectrometer.

John D. Venable , James Wohlschlegel , Daniel B. McClatchy , Sung Kyu Park
Analytical Chemistry 79 ( 8) 3056 -3064

58
2007
Central Limit Theorem as an Approximation for Intensity-Based Scoring Function

Rovshan Sadygov , James Wohlschlegel , Sung Kyu Park , Tao Xu
Analytical Chemistry 78 ( 1) 89 -95

28
2006
Quantitative proteomic analysis of primary neurons reveals diverse changes in synaptic protein content in fmr1 knockout mice

Lujian Liao , Sung Kyu Park , Tao Xu , Peter Vanderklish
Proceedings of the National Academy of Sciences of the United States of America 105 ( 40) 15281 -15286

144
2008