Determination of a transition state at atomic resolution from protein engineering data.

Emanuelel Paci , Michele Vendruscolo , Christopher M. Dobson , Martin Karplus
Journal of Molecular Biology 324 ( 1) 151 -163

105
2002
2021
The Structure of Neuronal Calcium Sensor-1 in Solution Revealed by Molecular Dynamics Simulations

Luca Bellucci , Stefano Corni , Rosa Di Felice , Emanuele Paci
PLoS ONE 8 ( 9) e74383

9
2013
Multi-dimensionality of Proteins’ Free-Energy Landscapes Revealed by Mechanical Probes

Emanuele Paci , Zu Thur Yew , Michael Schlierf , Matthias Rief
Biophysical Journal 98 ( 3)

2010
Mechanical Unfolding of an Ankyrin Repeat Protein

David Serquera , Whasil Lee , Giovanni Settanni , Piotr E. Marszalek
Biophysical Journal 98 ( 7) 1294 -1301

38
2010
Dynamics of the coiled-coil unfolding transition of myosin rod probed by dissipation force spectrum.

Yukinori Taniguchi , Bhavin S. Khatri , David J. Brockwell , Emanuele Paci
Biophysical Journal 99 ( 1) 257 -262

14
2010
Complex Unfolding Kinetics of Single-Domain Proteins in the Presence of Force

Michael Schlierf , Zu Thur Yew , Matthias Rief , Emanuele Paci
Biophysical Journal 99 ( 5) 1620 -1627

22
2010
Characterization of the molten globule state of retinol-binding protein using a molecular dynamics simulation approach.

Emanuele Paci , Lesley H. Greene , Rachel M. Jones , Lorna J. Smith
FEBS Journal 272 ( 18) 4826 -4838

9
2005
Characterization of long and stable de novo single alpha-helix domains provides novel insight into their stability.

Marcin Wolny , Matthew Batchelor , Gail J. Bartlett , Emily G. Baker
Scientific Reports 7 ( 1) 44341

16
2017
Mechanical Unfolding of a Titin Ig Domain: Structure of Unfolding Intermediate Revealed by Combining AFM, Molecular Dynamics Simulations, NMR and Protein Engineering

Susan B Fowler , Robert B Best , José L Toca Herrera , Trevor J Rutherford
Journal of Molecular Biology 322 ( 4) 841 -849

226
2002
Differential Effects of Hydrophobic Core Packing Residues for Thermodynamic and Mechanical Stability of a Hyperthermophilic Protein

Michael C. Wilson , Megan L. Hughes , Emanuele Paci , David J. Brockwell
Langmuir 32 ( 29) 7392 -7402

11
2016
The Effect of Increasing the Stability of Non-native Interactions on the Folding Landscape of the Bacterial Immunity Protein Im9

Victoria L. Morton , Claire T. Friel , Lucy R. Allen , Emanuele Paci
Journal of Molecular Biology 371 ( 2) 554 -568

29
2007
Donor-Strand Exchange in Chaperone-Assisted Pilus Assembly Revealed in Atomic Detail by Molecular Dynamics

Rebecca J. Rose , Thomas S. Welsh , Gabriel Waksman , Alison E. Ashcroft
Journal of Molecular Biology 375 ( 4) 908 -919

33
2008
Rate of loop formation in peptides: a simulation study.

Matthias J. Feige , Emanuele Paci
Journal of Molecular Biology 382 ( 2) 556 -565

18
2008
Simulation of fluorescence resonance energy transfer experiments: effect of the dyes on protein folding.

Lucy R Allen , Emanuele Paci
Journal of Physics: Condensed Matter 22 ( 23) 235103

5
2010
Unraveling the Factors That Control Soft Landing of Small Silyl Ions on Fluorinated Self-Assembled Monolayers

Juan José Nogueira , Yang Wang , Fernando Martín , Manuel Alcamí
Journal of Physical Chemistry C 118 ( 19) 10159 -10169

5
2014
Adaptive free energy sampling in multidimensional collective variable space using boxed molecular dynamics

Mike O'Connor , Emanuele Paci , Simon McIntosh-Smith , David R. Glowacki
Faraday Discussions 195 395 -419

11
2016
Nonexponential Kinetics of Loop Formation in Proteins and Peptides: A Signature of Rugged Free Energy Landscapes?

James Gowdy , Matthew Batchelor , Igor Neelov , Emanuele Paci
Journal of Physical Chemistry B 121 ( 41) 9518 -9525

14
2017
Myosin tails and single α-helical domains.

Matthew Batchelor , Marcin Wolny , Lorna Dougan , Emanuele Paci
Biochemical Society Transactions 43 ( 1) 58 -63

6
2015
The Role of High-Dimensional Diffusive Search, Stabilization, and Frustration in Protein Folding

Supreecha Rimratchada , Tom C.B. McLeish , Sheena E. Radford , Emanuele Paci
Biophysical Journal 106 ( 8) 1729 -1740

6
2014