A robust method for transcript quantification with RNA-seq data
Yan Huang , Yin Hu , Corbin D. Jones , James N. MacLeod
research in computational molecular biology 127 -147
2
2012
Abstract B1-61: RNA-seq differential splicing analysis of over six hundred colorectal cancer transcriptomes reveals subtype-specific isoform usage
Yin Hu , Rodrigo Dienstmann , Justin Guinney
Cancer Research 75
2015
DiffSplice: The genome-wide detection of differential splicing events with RNA-seq
Yin Hu , Yan Huang , Ying Du , Christian F. Orellana
Nucleic Acids Research 41 ( 2) 2
130
2013
Robust detection of alternative splicing in a population of single cells
Joshua D. Welch , Yin Hu , Jan F. Prins
Nucleic Acids Research 44 ( 8)
51
2016
A probabilistic framework for aligning paired-end RNA-seq data
Yin Hu , Kai Wang , Xiaping He , Derek Y. Chiang
Bioinformatics 26 ( 16) 1950 -1957
21
2010
FDM: a graph-based statistical method to detect differential transcription using RNA-seq data.
Darshan Singh , Christian F. Orellana , Yin Hu , Corbin D. Jones
Bioinformatics 27 ( 19) 2633 -2640
51
2011
Piecing the puzzle together: a revisit to transcript reconstruction problem in RNA-seq
Yan Huang , Yin Hu , Jinze Liu
BMC Bioinformatics 15 ( 9) 1 -12
4
2014
Combining tumor genome simulation with crowdsourcing to benchmark somatic single-nucleotide-variant detection.
Adam D Ewing , Kathleen E Houlahan , Yin Hu , Kyle Ellrott
Nature Methods 12 ( 7) 623 -630
215
2015
Global optimization of somatic variant identification in cancer genomes with a global community challenge
Paul C Boutros , Adam D Ewing , Kyle Ellrott , Thea C Norman
Nature Genetics 46 ( 4) 318 -319
37
2014
A robust method for transcript quantification with RNA-seq data.
Yan Huang , Yin Hu , Corbin D. Jones , James N. MacLeod
Journal of Computational Biology 20 ( 3) 167 -187
17
2013
A community challenge to evaluate RNA-seq, fusion detection, and isoform quantification methods for cancer discovery
Allison Creason , David Haan , Kristen Dang , Kami E Chiotti
Cell Systems
21
2021
RNA-seq differential splicing analysis of over six hundred colorectal cancer transcriptomes reveals subtype-specific isoform usage
Yin Hu , Rodrigo Dienstmann , Justin Guinney
CANCER RESEARCH 75 ( 22)
2015
RNA-seq differential transcription analysis of TCGA colorectal cancer (CRC) transcriptomes reveals subtype-specific isoform usage
Yin Hu , Rodrigo Dienstmann , Justin Guinney
Cancer Research 75 ( 15_Supplement) 1932 -1932
2015
Combining accurate tumour genome simulation with crowd-sourcing to benchmark somatic single nucleotide variant detection
Adam D Ewing , Kathleen E Houlahan , Yin Hu , Kyle Ellrott
Combining accurate tumor genome simulation with crowdsourcing to benchmark somatic structural variant detection.
AY Lee , AD Ewing , K Ellrott , Y Hu
Genome Biology 19 ( 1) 188 -188
25
2018
Challenge participants, Kellen MR, Norman TC, Haussler D, Friend SH, Stolovitzky G, Margolin AA, Stuart JM, Boutros PC. Combining tumor genome simulation with crowdsourcing to benchmark somatic single-nucleotide-variant detection
AD Ewing , KE Houlahan , Y Hu , K Ellrott
Nat Methods 12 ( 7) 623 -30
15
2015
ICGC-TCGA DREAM Somatic Mutation Calling Challenge participants
AD Ewing , KE Houlahan , Y Hu , K Ellrott
Kellen, MR, Norman, TC, Haussler, D., Friend, SH, Stolovitzky, G., Margolin, AA, Stuart, JM, Boutros, PC: Combining tumor genome simulation with crowdsourcing to benchmark somatic single-nucleotide-variant detection. Nat Methods 12 ( 7) 623 -30
9
2015
Unsupervised learning of high-order structural semantics from images
Jizhou Gao , Yin Hu , Jinze Liu , Ruigang Yang
international conference on computer vision 2122 -2129
25
2009