8.592J / HST.452J Statistical Physics in Biology, Spring 2005
Leonid Mirny , Mehran Kardar
2005
2012
Physical Models of Chromosomal Domains
Leonid Mirny
2017 AAAS Annual Meeting (February 16-20, 2017)
2017
Heterochromatin drives organization of conventional and inverted nuclei
Leonid Mirny , Boris Joffe , Maxim Imakaev , Heinrich Leonhardt
bioRxiv 244038
35
2018
Heterogeneity and Intrinsic Variation in Spatial Genome Organization [preprint]
Leonid Mirny , Gianluca Pegoraro , Elizabeth Finn , Job Dekker
2017
A Ligand-Based Approach to Understanding Selectivity of Nuclear Hormone Receptors PXR, CAR, FXR, LXRα, and LXRβ
Sean Ekins , Leonid Mirny , Erin G. Schuetz
Pharmaceutical Research 19 ( 12) 1788 -1800
78
2002
Condensin II inactivation in interphase does not affect chromatin folding or gene expression
Nezar Abdennur , Wibke Schwarzer , Aleksandra Pekowska , Indra Alon Shaltiel
bioRxiv 437459
9
2018
High-order chromatin architecture determines the landscape of chromosomal alterations in cancer
Geoffrey Fudenberg , Gad Getz , Matthew Meyerson , Leonid Mirny
Nature Precedings 6 1 -1
2011
Polymer models of topological insulators
Boryana Doyle , Maxim Imakaev , Geoffrey Fudenberg , Leonid Mirny
Epigenetics & Chromatin 6 ( S1) 127
2013
Chromosomal architecture changes upon cell differentiation
Maxim Imakaev , Geoffrey Fudenberg , Leonid Mirny
Epigenetics & Chromatin 6 ( S1) 130
2013
Polymer models of yeast S. cerevisiae genome organization
Geoff Fudenberg , Jon-Matthew Belton , Anton Goloborodko , Maxim Imakaev
Epigenetics & Chromatin 6 ( S1) 128
2013
S cerevisiae genome as a confined equilibrium polymer brush
Anton Goloborodko , Jon Matthew Belton , Geoffrey Fudenberg , Maxim Imakaev
Epigenetics & Chromatin 6 ( S1) 129
1
2013
Protein fold recognition and dynamics in the space of contact maps.
Leonid Mirny , Eytan Domany
Proteins 26 ( 4) 391 -410
72
1996
Protein folding theory: from lattice to all-atom models.
Leonid Mirny , Eugene Shakhnovich
Annual Review of Biophysics and Biomolecular Structure 30 ( 1) 361 -396
438
2001
How a protein searches for its site on DNA: the mechanism of facilitated diffusion
Leonid Mirny , Michael Slutsky , Zeba Wunderlich , Anahita Tafvizi
Journal of Physics A 42 ( 43) 434013
270
2009
Intrinsic fluctuations, robustness, and tunability in signaling cycles.
Joseph Levine , Hao Yuan Kueh , Leonid Mirny
Biophysical Journal 92 ( 12) 4473 -4481
50
2007
Two independent modes of chromatin organization revealed by cohesin removal
Wibke Schwarzer , Nezar Abdennur , Anton Goloborodko , Aleksandra Pekowska
Nature 551 ( 7678) 51 -56
553
2017
Oncogene-triggered suppression of DNA repair leads to DNA instability in cancer
Julia A. Yaglom , Christopher McFarland , Leonid Mirny , Michael Y. Sherman
Oncotarget 5 ( 18) 8367 -8378
16
2014
Virus shapes and buckling transitions in spherical shells.
Jack Lidmar , Leonid Mirny , David R. Nelson
Physical Review E 68 ( 5) 051910 -051910
352
2003
Diffusion in correlated random potentials, with applications to DNA.
Michael Slutsky , Mehran Kardar , Leonid Mirny
Physical Review E 69 ( 6) 061903
101
2004
Job Dekker Maxim (Max) Imakaev Geoffrey Fudenberg Nezar Abdennur Anton Goloborodko Bryan R. Lajoie Eugene Shakhnovich Hugo B. Brandão Johan Gibcus Erez Lieberman Aiden Zeba Wunderlich Peter J Park Mehran Kardar Edward J Banigan Mikhail Gelfand John F. Marko Benoit G. Bruneau Christopher D McFarland Anne-Laure Valton Antoine van Oijen