Linguistic constructs for BSP style programming

Cheatham
1996 Proceedings ICPP Workshop on Challenges for Parallel Processing 96 -102

6
1996
Fostering Collaboration Among Organizations in the Research Computing and Data Ecosystem

Sharon Broude Geva , Dana Brunson , Thomas Cheatham III , James Deaton
Practice and Experience in Advanced Research Computing 393 -401

2020
A systematic molecular dynamics study of nearest-neighbor effects on base pair and base pair step conformations and fluctuations in B-DNA

Richard Lavery , Krystyna Zakrzewska , David Beveridge , Thomas C Bishop
Nucleic Acids Research 38 ( 1) 299 -313

325
2010
Molecular Dynamics Simulations on Solvated Biomolecular Systems: The Particle Mesh Ewald Method Leads to Stable Trajectories of DNA, RNA, and Proteins

T. E. III Cheatham , J. L. Miller , T. Fox , T. A. Darden
Journal of the American Chemical Society 117 ( 14) 4193 -4194

921
1995
Observation of theA-DNA toB-DNA Transition During Unrestrained Molecular Dynamics in Aqueous Solution

T.E. Cheatham, III , P.A. Kollma
Journal of Molecular Biology 259 ( 3) 434 -444

208
1996
A Comparison of Electronic States in Periodic and Aperiodic Poly(dA)–Poly(dT) DNA

J.P. Lewis , J. Pikus , Th.E. Cheatham III , E.B. Starikov
Physica Status Solidi B-basic Solid State Physics 233 ( 1) 90 -100

18
2002
Recent advances in molecular dynamics simulation towards the realistic representation of biomolecules in solution

Thomas E. Cheatham III. , Bernard R. Brooks
Theoretical Chemistry Accounts 99 ( 5) 279 -288

49
1998
Adventures in Improving the Scaling and Accuracy of a Parallel Molecular Dynamics Program

Michael Crowley , Tom Darden , Thomas Cheatham Iii , David Deerfield Ii
The Journal of Supercomputing 11 ( 3) 255 -278

84
1997
Sequence-dependent structural properties of B-DNA: what have we learned in 40 years?

Gabriela Da Rosa , Leandro Grille , Victoria Calzada , Katya Ahmad
Biophysical Reviews 1 -11

9
2021
Structurally Minimized μ‐Conotoxin Analogues as Sodium Channel Blockers: Implications for Designing Conopeptide‐Based Therapeutics

Tiffany S. Han , Min-Min Zhang , Aleksandra Walewska , Pawel Gruszczynski
ChemMedChem 4 ( 3) 406 -414

58
2009
Amber 2021

David A Case , H Metin Aktulga , Kellon Belfon , Ido Ben-Shalom
Smpte Journal

645
2021
AMBER 9

David A Case , TA Darden , Thomas E Cheatham III , CL Simmerling
University of California, San Francisco 45

3,690
2006
AMBER 10, Users’ Manual

David A Case , TA Darden , Thomas E Cheatham III , CL Simmerling
University of California, San Francisco 30

45
2008
Encyclopedia of computational chemistry

Paul von Ragué Schleyer , Peter R Schreiner , Henry F Schaefer III , William L Jorgensen
(No Title)

467
1998
AMBER 22 reference manual

David A Case , Robert E Duke , Ross C Walker , Nikolai R Skrynnikov
University of California, San Francisco, United States-California

123
2022
AmberTools 2012

David A Case , Hasan Metin Aktulga , Kellon Belfon , David S Cerutti
UC San Francisco

2012
AMBER 7

David A Case , David A Pearlman , James W Caldwell , Thomas E Cheatham III
University of California, San Francisco 9 -9

12,312
2002
The Amber biomolecular simulation programs

David A Case , Thomas E Cheatham III , Tom Darden , Holger Gohlke
Journal of Computational Chemistry 26 ( 16) 1668 -1688

8,524
2005