histoCAT: analysis of cell phenotypes and interactions in multiplex image cytometry data.

Denis Schapiro , Hartland W Jackson , Swetha Raghuraman , Jana R Fischer
Nature Methods 14 ( 9) 873 -876

174
2017
Loss of epigenetic regulation disrupts lineage integrity, induces aberrant alveogenesis, and promotes breast cancer

Ellen Langille , Khalid N Al-Zahrani , Zhibo Ma , Minggao Liang
Cancer discovery 12 ( 12) 2930 -2953

14
2022
Loss of epigenetic regulation disrupts lineage integrity, reactivates multipotency and promotes breast cancer

Ellen R Langille , Khalid N Al-Zahrani , Zhibo Ma , Ahmad Malik
bioRxiv 2021.10. 22.465428 -2021.10. 22.465428

2
2021
Single-cell analysis of an engineered organoid-based model of pancreatic cancer identifies hypoxia as a contributing factor in the determination of transcriptional subtypes

Natalie Landon-Brace , Brendan T Innes , Simon Latour , Jose L Cadavid
bioRxiv 2024.03. 05.583412 -2024.03. 05.583412

2024
Ubiquitin ligase RNF8 suppresses Notch signaling to regulate mammary development and tumorigenesis

Li Li , Kiran Kumar Naidu Guturi , Brandon Gautreau , Parasvi S Patel
The Journal of Clinical Investigation 131 ( 13)

2021
Single-cell proteomics defines the cellular heterogeneity of localized prostate cancer

Laura De Vargas Roditi , Andrea Jacobs , Jan H Rueschoff , Pete Bankhead
Cell Reports Medicine 3 ( 4)

18
2022
Whole slide Imaging Mass Cytometry allows the rapid profiling of the immune landscape of histopathologically aggressive prostate tumors

Jennifer L Gorman , Lydia Y Liu , Jordan P Hartig , Nikesh Parsotam
Cancer Research 84 ( 6_Supplement) 5561 -5561

2024
FABP7 Progenitors are a Targetable Metabolic Root in the BRCA1 Breast

Curtis W McCloskey , Bowen Zhang , Matthew Waas , Golnaz Abazari
bioRxiv 2023.11. 02.565360 -2023.11. 02.565360

2023
Loss of the Timp gene family is sufficient for the acquisition of the CAF-like cell state

Masayuki Shimoda , Simona Principe , Hartland W Jackson , Valbona Luga
Nature Cell Biology 16 ( 9) 889 -901

123
2014
In vivo CRISPR screens reveal Serpinb9 and Adam2 as regulators of immune therapy response in lung cancer

Dzana Dervovic , Ahmad A Malik , Edward LY Chen , Masahiro Narimatsu
Nature communications 14 ( 1) 3150 -3150

15
2023
Automated assignment of cell identity from single-cell multiplexed imaging and proteomic data

Michael J Geuenich , Jinyu Hou , Sunyun Lee , Shanza Ayub
Cell Systems 12 ( 12) 1173 -1186. e5

35
2021
Segmentation aware probabilistic phenotyping of single-cell spatial protein expression data

Yuju Lee , Edward LY Chen , Darren CH Chan , Anuroopa Dinesh
bioRxiv 2024.02. 29.582827 -2024.02. 29.582827

2024
Imaging mass cytometry and multiplatform genomics define the phenogenomic landscape of breast cancer

H Raza Ali , Hartland W Jackson , Vito RT Zanotelli , Esther Danenberg
Nature Cancer 1 ( 2) 163 -175

45
2020
Design Parameters for a Mass Cytometry Detectable HaloTag Ligand

Nicole Potter , Simon Latour , Edmond CN Wong , Mitchell A Winnik
Bioconjugate Chemistry 35 ( 1) 80 -91

2023
Single-cell atlas of the human brain vasculature across development, adulthood and disease

Thomas Wälchli , Moheb Ghobrial , Marc Schwab , Shigeki Takada
Nature 1 -11

2024
An Automation Workflow for High‐Throughput Manufacturing and Analysis of Scaffold‐Supported 3D Tissue Arrays

Ruonan Cao , Nancy T Li , Simon Latour , Jose L Cadavid
Advanced Healthcare Materials 12 ( 19) 2202422 -2202422

6
2023
Signal amplification by cyclic extension enables high-sensitivity single-cell mass cytometry

Xiao-Kang Lun , Kuanwei Sheng , Xueyang Yu , Ching Yeung Lam
Nature Biotechnology 1 -11

2024
Tumor suppression by stromal TIMPs

Masayuki Shimoda , Hartland W. Jackson , Rama Khokha
Molecular and Cellular Oncology 3 ( 3)

10
2016
Progesterone induces adult mammary stem cell expansion

Purna A. Joshi , Hartland W. Jackson , Alexander G. Beristain , Marco A. Di Grappa
Nature 465 ( 7299) 803 -807

522
2010
TIMP3 Regulates Mammary Epithelial Apoptosis with Immune Cell Recruitment Through Differential TNF Dependence

Carlo V. Hojilla , Hartland W. Jackson , Rama Khokha
PLoS ONE 6 ( 10) e26718

20
2011