Jeremy L Muhlich
机构: Director of Software Engineering, Harvard Medical School Laboratory of Systems Pharmacology
每年引用次数
引用次数
引用: 3,397
H-指数: 22
I10-指数 : 30
出版物: 51
ChemBank: a small-molecule screening and cheminformatics resource database
K. P. Seiler , G. A. George , M. P. Happ , N. E. Bodycombe
Nucleic Acids Research 36 351 -359
330
2007
A Systems Toxicology Approach for the Prediction of Kidney Toxicity and Its Mechanisms In Vitro.
Susanne Ramm , Petar Todorov , Vidya Chandrasekaran , Anders Dohlman
Toxicological Sciences 169 ( 1) 54 -69
7
2019
Flexible informatics for linking experimental data to mathematical models via DataRail
Julio Saez-Rodriguez , Arthur Goldsipe , Jeremy Muhlich , Leonidas G. Alexopoulos
Bioinformatics 24 ( 6) 840 -847
72
2008
Sporadic ERK pulses drive non-genetic resistance in drug-adapted BRAFV600E melanoma cells
Luca Gerosa , Christopher Chidley , Fabian Froehlich , Gabriela Sanchez
bioRxiv 762294
6
2019
Receptor-Driven ERK Pulses Reconfigure MAPK Signaling and Enable Persistence of Drug-Adapted BRAF-Mutant Melanoma Cells
Luca Gerosa , Christopher Chidley , Fabian Fröhlich , Gabriela Sanchez
Cell systems 11 ( 5)
51
2020
Abstract LB-B09: ERK pulses drive non-genetic resistance in drug-adapted BRAFV600E melanoma cells
Luca Gerosa , Christopher Chidley , Fabian Froehlich , Gabriela Sanchez
Molecular Cancer Therapeutics 18
2019
Minerva: a light-weight, narrative image browser for multiplexed tissue images.
John Hoffer , Rumana Rashid , Jeremy Muhlich , Yu-An Chen
Journal of open source software 5 ( 54) 2579
3
2020
piNET: a versatile web platform for downstream analysis and visualization of proteomics data
Behrouz Shamsaei , Szymon Chojnacki , Marcin Pilarczyk , Mehdi Najafabadi
bioRxiv 607432
20
2019
Highly multiplexed immunofluorescence images and single-cell data of immune markers in tonsil and lung cancer.
Rumana Rashid , Giorgio Gaglia , Yu-An Chen , Jia-Ren Lin
Scientific Data 6 ( 1) 323
40
2019
MITI minimum information guidelines for highly multiplexed tissue images
Denis Schapiro , Clarence Yapp , Artem Sokolov , Sheila M Reynolds
Nature methods 19 ( 3) 262 -267
43
2022
Visinity: Visual spatial neighborhood analysis for multiplexed tissue imaging data
Simon Warchol , Robert Krueger , Ajit Johnson Nirmal , Giorgio Gaglia
IEEE transactions on visualization and computer graphics 29 ( 1) 106 -116
11
2022
Scope2screen: Focus+ context techniques for pathology tumor assessment in multivariate image data
Jared Jessup , Robert Krueger , Simon Warchol , John Hoffer
IEEE transactions on visualization and computer graphics 28 ( 1) 259 -269
16
2021
Bayesian parameter estimation and model discrimination for complex biochemical networks
Hoda Eydgahi , William W Chen , Jeremy Muhlich , Dennis Vitkup
Addressing persistent challenges in digital image analysis of cancerous tissues
Sandhya Prabhakaran , Clarence Yapp , Gregory J Baker , Johanna Beyer
bioRxiv
1
2023
Method for creating a tissue microarray-capable, slide-scanning acquisition device from any motorized microscope
Steven P Nilsen , M Lora DLM Ong , Jeremy Muhlich , Jay Copeland
2020
Curating cartography: Enabling the harmonisation, visualisation, and reuse of diverse multiplexed imaging data through the Human Tumor Atlas Network Data Coordinating Center
Adam J Taylor , Milen Nikolov , Ino de Brujin , Jeremy Muhlich
Cancer Research 82 ( 12_Supplement) 2131 -2131
2022
Mechanistic model of MAPK signaling reveals how allostery and rewiring contribute to drug resistance
Fabian Fröhlich , Luca Gerosa , Jeremy Muhlich , Peter K Sorger
Molecular Systems Biology 19 ( 2) e10988 -e10988
18
2023
psudo: Exploring Multi‐Channel Biomedical Image Data with Spatially and Perceptually Optimized Pseudocoloring
Simon Warchol , Jakob Troidl , Jeremy Muhlich , Robert Krueger
Computer Graphics Forum 43 ( 3) e15103 -e15103
2024
pysb Documentation
Jeremy Muhlich
2024
shinyDepMap, a tool to identify targetable cancer genes and their functional connections from Cancer Dependency Map data.
Jeremy L Muhlich , Kenichi Shimada , John A Bachman , Timothy J Mitchison
eLife 10
2021