Tandem mass spectrometry identifies many mouse brain O-GlcNAcylated proteins including EGF domain-specific O-GlcNAc transferase targets

J. F. Alfaro , C.-X. Gong , M. E. Monroe , J. T. Aldrich
Proceedings of the National Academy of Sciences of the United States of America 109 ( 19) 7280 -7285

205
2012
Genome and Proteome Analysis of Industrial Fungi

S. E. Baker , C. F. Wend , D. Martinez , J. K. Magnuson
GD Robson, P van West and G Gadd; Cambridge University Press, New York, New York, United States.

2007
DeconMSn: a software tool for accurate parent ion monoisotopic mass determination for tandem mass spectra

A. M. Mayampurath , N. Jaitly , S. O. Purvine , M. E. Monroe
Bioinformatics 24 ( 7) 1021 -1023

164
2008
Mixed-effects statistical model for comparative LC-MS proteomics studies.

D. S. Daly , K. K. Anderson , E. A. Panisko , S. O. Purvine
Journal of Proteome Research 7 ( 3) 1209 -1217

34
2008
A proteomic study of the HUPO plasma Proteome Project's pilot samples using an accurate mass and time tag strategy

Joshua N. Adkins , Matthew E. Monroe , Kenneth J. Auberry , Yufeng Shen
Proteomics 5 ( 13) 3454 -3466

66
2005
Proteogenomic and metabolomic characterization of human glioblastoma

Liang-Bo Wang , Alla Karpova , Marina A Gritsenko , Jennifer E Kyle
Cancer Cell 39 ( 4)

198
2021
New Insights Into Lignification via Network and Multi-Omics Analyses of Arogenate Dehydratase Knock-Out Mutants in Arabidopsis thaliana

Laurence B. Davin , Ljiljana Paša-Tolić , Therese R. Clauss , Karl K. Weitz
Frontiers in Plant Science 12

1
2021
Advances in Proteomics Data Analysis and Display Using an Accurate Mass and Time Tag Approach

Jennifer S.D. Zimmer , Matthew E. Monroe , Wei-Jun Qian , Richard D. Smith
Mass Spectrometry Reviews 25 ( 3) 450 -482

358
2006
Reversed‐phase chromatography with multiple fraction concatenation strategy for proteome profiling of human MCF10A cells

Yuexi Wang , Feng Yang , Marina A. Gritsenko , Yingchun Wang
Proteomics 11 ( 10) 2019 -2026

515
2011
STEPS: A grid search methodology for optimized peptide identification filtering of MS/MS database search results

Paul D. Piehowski , Vladislav A. Petyuk , John D. Sandoval , Kristin E. Burnum
Proteomics 13 ( 5) 766 -770

16
2013
Comparing identified and statistically significant lipids and polar metabolites in 15-year old serum and dried blood spot samples for longitudinal studies.

Jennifer E Kyle , Cameron P Casey , Kelly G Stratton , Erika M Zink
Rapid Communications in Mass Spectrometry 31 ( 5) 447 -456

19
2017
Applications in Data-Intensive Computing

Anuj R Shah , Joshua N Adkins , Douglas J Baxter , William R Cannon
Advances in Computers 79 1 -70

1
2010
An efficient data format for mass spectrometry-based proteomics

Anuj R. Shah , Jennifer Davidson , Matthew E. Monroe , Anoop M. Mayampurath
Journal of the American Society for Mass Spectrometry 21 ( 10) 1784 -1788

13
2010
Reproducible workflow for multiplexed deep-scale proteome and phosphoproteome analysis of tumor tissues by liquid chromatography-mass spectrometry

Philipp Mertins , Lauren C. Tang , Karsten Krug , David J. Clark
Nature Protocols 13 ( 7) 1632 -1661

292
2018
Uncovering biologically significant lipid isomers with liquid chromatography, ion mobility spectrometry and mass spectrometry

Jennifer E Kyle , Xing Zhang , Karl K Weitz , Matthew E Monroe
The Analyst 141 ( 5) 1649 -1659

198
2016
Multi-platform 'Omics Analysis of Human Ebola Virus Disease Pathogenesis.

Amie J. Eisfeld , Peter J. Halfmann , Jason P. Wendler , Jennifer E. Kyle
Cell Host & Microbe 22 ( 6) 817 -8298

44
2017
Coupling Front-End Separations, Ion Mobility Spectrometry, and Mass Spectrometry For Enhanced Multidimensional Biological and Environmental Analyses

Xueyun Zheng , Roza Wojcik , Xing Zhang , Yehia M Ibrahim
Reviews in Analytical Chemistry 10 ( 1) 71 -92

86
2017