Marcin J. Skwark
机构: Bioinformatics Lead, InstaDeep
每年引用次数
引用次数
引用: 1,486
H-指数: 20
I10-指数 : 24
出版物: 39
Improved predictions by Pcons.net using multiple templates
P. Larsson , M. J. Skwark , B. Wallner , A. Elofsson
Bioinformatics 27 ( 3) 426 -427
11
2011
In's and out's of the Bacillus subtilis membrane proteome
Jan Maarten van Dijl , Marcin J. Skwark , Jessica C. Zweers , Mark J. J. B. Sibbald
Bacillus: Cellular and Molecular Biology ( 3) 253 -284
5
2012
Protein Contact Prediction from Amino Acid Co-Evolution Using Convolutional Networks for Graph-Valued Images
Vladimir Golkov , Marcin J Skwark , Antonij Golkov , Alexey Dosovitskiy
neural information processing systems 29 4215 -4223
43
2016
Designing a Prospective COVID-19 Therapeutic with Reinforcement Learning
Marcin J. Skwark , Ugur Sahin , Amine Kerkeni , Alexandre Laterre
arXiv: Biomolecules
2
2020
3D Deep Learning for Biological Function Prediction from Physical Fields
Vladimir Golkov , Marcin J. Skwark , Jens Meiler , Daniel Cremers
international conference on 3d vision 928 -937
2020
Membrane remodeling capacity of a vesicle‐inducing glycosyltransferase
Changrong Ge , Jordi Gómez-Llobregat , Marcin J. Skwark , Jean-Marie Ruysschaert
FEBS Journal 281 ( 16) 3667 -3684
12
2014
Interacting networks of resistance, virulence and core machinery genes identified by genome-wide epistasis analysis
Marcin J. Skwark , Nicholas J. Croucher , Santeri Puranen , Claire Chewapreecha
PLOS Genetics 13 ( 2) e1006508
62
2017
Discoidin domain receptor 1 kinase activity is required for regulating collagen IV synthesis.
Corina M. Borza , Yan Su , Truc-Linh Tran , Ling Yu
Matrix Biology 57 258 -271
23
2017
PconsFold: improved contact predictions improve protein models.
Mirco Michel , Sikander Hayat , Marcin J. Skwark , Chris Sander
Bioinformatics 30 ( 17) 482 -488
94
2014
Assessment of global and local model quality in CASP8 using Pcons and ProQ.
Per Larsson , Marcin J. Skwark , Björn Wallner , Arne Elofsson
Proteins 77 ( 9) 167 -172
53
2009
PconsC: combination of direct information methods and alignments improves contact prediction.
Marcin J. Skwark , Abbi Abdel-Rehim , Arne Elofsson
Bioinformatics 29 ( 14) 1815 -1816
90
2013
PconsD: ultra rapid, accurate model quality assessment for protein structure prediction.
Marcin J. Skwark , Arne Elofsson
Bioinformatics 29 ( 14) 1817 -1818
31
2013
Computational saturation mutagenesis to predict structural consequences of systematic mutations in the beta subunit of RNA polymerase in Mycobacterium leprae.
Sundeep Chaitanya Vedithi , Carlos H.M. Rodrigues , Stephanie Portelli , Marcin J. Skwark
Computational and structural biotechnology journal 18 271 -286
12
2020
HARP: a database of structural impacts of systematic missense mutations in drug targets of Mycobacterium leprae
Sundeep Chaitanya Vedithi , Sony Malhotra , Marcin J. Skwark , Asma Munir
Computational and Structural Biotechnology Journal 18 3692 -3704
2
2020
Membrane protein contact and structure prediction using co-evolution in conjunction with machine learning.
Pedro L. Teixeira , Jeff L. Mendenhall , Sten Heinze , Brian Weiner
PLOS ONE 12 ( 5) 0177866
3
2017
Analysis of metabolic pathways in mycobacteria to aid drug-target identification
Bridget P Bannerman , Sundeep C Vedithi , Jorge Júlvez , Pedro Torres
bioRxiv 535856
2
2019
Mycobacterial genomics and structural bioinformatics: opportunities and challenges in drug discovery.
Vaishali P. Waman , Sundeep Chaitanya Vedithi , Sherine E. Thomas , Bridget P. Bannerman
Emerging microbes & infections 8 ( 1) 109 -118
15
2019
Improved Contact Predictions Using the Recognition of Protein Like Contact Patterns
Marcin J. Skwark , Daniele Raimondi , Mirco Michel , Arne Elofsson
PLoS Computational Biology 10 ( 11) e1003889 -14
178
2014
Improving Contact Prediction along Three Dimensions
Christoph Feinauer , Marcin J. Skwark , Andrea Pagnani , Erik Aurell
PLoS Computational Biology 10 ( 10) e1003847 -13
89
2014
Mabellini: a genome-wide database for understanding the structural proteome and evaluating prospective antimicrobial targets of the emerging pathogen Mycobacterium abscessus.
Marcin J Skwark , Pedro H M Torres , Liviu Copoiu , Bridget Bannerman
Database 2019 ( 1)
10
2019