引用次数
引用: 3,927
H-指数: 15
I10-指数 : 15
出版物: 37
Accurate identification of centromere locations in yeast genomes using Hi-C
N. Varoquaux , I. Liachko , F. Ay , J. N. Burton
Nucleic Acids Research 43 ( 11) 5331 -5339
35
2015
A statistical approach for inferring the 3D structure of the genome
N. Varoquaux , F. Ay , W. S. Noble , J.-P. Vert
Bioinformatics 30 ( 12) 26 -33
247
2014
Effective normalization for copy number variation in Hi-C data
N. Servant , N. Varoquaux , E. Heard , JP. Vert
bioRxiv 167031
2017
Three-dimensional modeling of the P. falciparum genome during the erythrocytic cycle reveals a strong connection between genome architecture and gene expression
F. Ay , E. M. Bunnik , N. Varoquaux , S. M. Bol
Genome Research 24 ( 6) 974 -988
172
2014
8th European Conference on Python in Science (EuroSciPy 2015)
Nelle Varoquaux
arXiv: Other Computer Science
2016
Measuring Cluster Stability for Bayesian Nonparametrics Using the Linear Bootstrap
Ryan Giordano , Runjing Liu , Nelle Varoquaux , Michael I Jordan
arXiv: Methodology
1
2017
Inferring diploid 3D chromatin structures from Hi-C data
Nelle Varoquaux , Jean Philippe Vert , William Stafford Noble , Alexandra Gesine Cauer
workshop on algorithms in bioinformatics ( 143) 13
1
2019
Dynamics of the compartmentalized Streptomyces chromosome during metabolic differentiation
Nelle Varoquaux , Ivan Junier , Bertrand Aigle , Pierre Leblond
bioRxiv
15
2021
Genome-resolved metagenomics reveals role of iron metabolism in drought-induced rhizosphere microbiome dynamics.
Nelle Varoquaux , Peggy G Lemaux , Mary Lou Guerinot , Robert Hutmacher
Nature Communications 12 ( 1) 3209
55
2021
Identifying multi-locus chromatin contacts in human cells using tethered multiple 3C
Ferhat Ay , Thanh H Vu , Michael J Zeitz , Nelle Varoquaux
BMC Genomics 16 ( 1) 121 -121
45
2015
Changes in genome organization of parasite-specific gene families during the Plasmodium transmission stages.
Evelien M. Bunnik , Kate B. Cook , Nelle Varoquaux , Gayani Batugedara
Nature Communications 9 ( 1) 1910 -1910
45
2018
HiC-Pro: an optimized and flexible pipeline for Hi-C data processing
Nicolas Servant , Nelle Varoquaux , Bryan R. Lajoie , Eric Viara
Genome Biology 16 ( 1) 259 -259
1,287
2015
Transcriptomic analysis of field-droughted sorghum from seedling to maturity reveals biotic and metabolic responses.
Nelle Varoquaux , Benjamin Cole , Cheng Gao , Grady Pierroz
Proceedings of the National Academy of Sciences of the United States of America 116 ( 52) 27124 -27132
105
2019
A pipeline to analyse time-course gene expression data
Nelle Varoquaux , Elizabeth Purdom
F1000Research 9 1447
2020
Multiple dimensions of epigenetic gene regulation in the malaria parasitePlasmodium falciparum
Ferhat Ay , Evelien M. Bunnik , Nelle Varoquaux , Jean-Philippe Vert
BioEssays 37 ( 2) 182 -194
69
2015
circHiC: circular visualization of Hi-C data and integration of genomic data
Ivan Junier , Nelle Varoquaux
bioRxiv
2020
iced: fast and memory efficient normalization of contact maps
Nelle Varoquaux , Nicolas Servant
The Journal of Open Source Software 4 ( 36) 1286
2
2019
Unveiling the links between peptide identification and differential analysis FDR controls by means of a practical introduction to knockoff filters
Lucas Etourneau , Nelle Varoquaux , Thomas Burger
Smpte Journal 1 -24
3
2021
Cell wall compositions of Sorghum bicolor leaves and roots remain relatively constant under drought conditions
Tess Scavuzzo-Duggan , Nelle Varoquaux , Mary Madera , John P Vogel
Frontiers in Plant Science 12 747225 -747225
6
2021
Inference of genome 3d architecture by modeling overdispersion of hi-c data
Nelle Varoquaux , William S Noble , Jean-Philippe Vert
bioRxiv 2021.02. 04.429864 -2021.02. 04.429864
3
2021
Jean-Philippe Vert William Stafford Noble Ferhat Ay Nicolas Servant Emmanuel Barillot Edith Heard Bryan R. Lajoie Job Dekker Evelien Bunnik Karine Le Roch Elizabeth Purdom Peggy G. Lemaux Devin Coleman-Derr Ivan Junier R.Stuart Geiger John W. Taylor Cheng Gao (高程) Kate B Cook Christopher R. Holdgraf