引用次数
引用: 937
H-指数: 15
I10-指数 : 20
出版物: 86
Compression for Similarity Queries
Thomas A. Courtade , Tsachy Weissman , Idoia Ochoa , Amir Ingber
23th International Zurich Seminar on Communications (IZS 2014)
2014
MPEG-G the emerging standard for genomic data compression
Claudio Alberti , Mikel Hernaez , Marco Mattavelli , Idoia Ochoa
Rocky 2017 Bioinformatics Conference
2017
DeepZip: Lossless Data Compression using Recurrent Neural Networks
Idoia Ochoa , Kedar Tatwawadi , Mohit Goyal , Shubham Chandak
arXiv: Computation and Language
50
2018
Genomic analysis pipeline: overview, challenges, and proposed solutions
Idoia Ochoa
Barcelona Supercomputing Center 24 -25
2019
SimiC: A Single Cell Gene Regulatory Network Inference method with Similarity Constraints
Jianhao Peng , Ullas V Chembazhi , Sushant Bangru , Ian M Traniello
bioRxiv
1
2020
Moss enables high sensitivity single-nucleotide variant calling from multiple bulk DNA tumor samples.
Mohammed El-Kebir , Idoia Ochoa , Idoia Ochoa , Chuanyi Zhang
Nature Communications 12 ( 1) 2204 -2204
2021
An introduction to MPEG-G, the new ISO standard for genomic information representation
Claudio Albert , Tom Paridaens , Jan Voges , Daniel Naro
bioRxiv 426353
7
2018
Compression of Nanopore FASTQ Files
Guillermo Dufort y Álvarez , Gadiel Seroussi , Pablo Smircich , José Sotelo
7th International Work-Conference on Bioinformatics and Biomedical Engineering, IWBBIO 2019 36 -47
6
2019
Denoising of Aligned Genomic Data.
Irena Fischer-Hwang , Idoia Ochoa , Tsachy Weissman , Mikel Hernaez
Scientific Reports 9 ( 1) 15067
2
2019
Aligned genomic data compression via improved modeling.
Idoia Ochoa , Mikel Hernaez , Tsachy Weissman
Journal of Bioinformatics and Computational Biology 12 ( 6) 1442002 -1442002
7
2014
QVZ: lossy compression of quality values
Greg Malysa , Mikel Hernaez , Idoia Ochoa , Milind Rao
Bioinformatics 31 ( 19) 3122 -3129
74
2015
Comment on: 'ERGC: an efficient referential genome compression algorithm'.
Sebastian Deorowicz , Szymon Grabowski , Idoia Ochoa , Mikel Hernaez
Bioinformatics 32 ( 7) 1115 -1117
3
2016
GTRAC: fast retrieval from compressed collections of genomic variants
Kedar Tatwawadi , Mikel Hernaez , Idoia Ochoa , Tsachy Weissman
Bioinformatics 32 ( 17) 479 -486
10
2016
ENANO: Encoder for NANOpore FASTQ files.
Guillermo Dufort y Álvarez , Gadiel Seroussi , Pablo Smircich , José Sotelo
Bioinformatics 36 ( 16) 4506 -4507
3
2020
GPress: a framework for querying general feature format (GFF) files and expression files in a compressed form.
Qingxi Meng , Idoia Ochoa , Mikel Hernaez
Bioinformatics 36 ( 18) 4810 -4812
2020
Turbo joint source-channel coding of non-uniform memoryless sources in the bandwidth-limited regime
Idoia Ochoa , Pedro Crespo , Javier Ser , Mikel Hernaez
IEEE Communications Letters 14 ( 4) 336 -338
2010
LDPC Codes for Non-Uniform Memoryless Sources and Unequal Energy Allocation
Idoia Ochoa , Pedro M. Crespo , Mikel Hernaez
IEEE Communications Letters 14 ( 9) 794 -796
6
2010
“GPress: a framework for querying General Feature Format (GFF) files and feature expression files in a compressed form”
Qingxi Meng , Idoia Ochoa , Mikel Hernaez
bioRxiv 833087
2019
E2M: A Deep Learning Framework for Associating Combinatorial Methylation Patterns with Gene Expression
Jianhao Peng , Idoia Ochoa , Olgica Milenkovic
bioRxiv 527044
3
2019
Joint Turbo Coding and Source-Controlled Modulation of Cycle-Stationary Sources in the Bandwidth-Limited Regime
Idoia Ochoa , Pedro M. Crespo , Javier Del Ser , Mikel Hernaez
mobile lightweight wireless systems 618 -625
2010
Mikel Hernaez Tsachy Weissman Shubham Chandak Kedar Tatwawadi Pablo Smircich Gadiel Seroussi Mohit Goyal Jose Sotelo-Silveira Alexandros Manolakos Guillermo Dufort y Álvarez Mainak Chowdhury Albert No Rachel Goldfeder Euan A. Ashley Greg Malysa Milind Rao Dinesh Bharadia Olivier Gevaert Pedro M Crespo