The Architecture of a Scrambled Genome Reveals Massive Levels of Genomic Rearrangement during Development

Xiao Chen , John R. Bracht , Aaron David Goldman , Egor Dolzhenko
Cell 158 ( 5) 1187 -1198

113
2014
Piwi-interacting RNAs protect DNA against loss during Oxytricha genome rearrangement.

Wenwen Fang , Xing Wang , John R. Bracht , Mariusz Nowacki
Cell 151 ( 6) 1243 -1255

109
2012
Genomes on the edge: programmed genome instability in ciliates

John R. Bracht , Wenwen Fang , Aaron David Goldman , Egor Dolzhenko
Cell 152 ( 3) 406 -416

72
2013
Direct Detection of DNA and RNA on Carbon Fiber Microelectrodes Using Fast-Scan Cyclic Voltammetry.

John R. Bracht , Whirang Cho , Alexander G. Zestos , Favian A. Liu
ACS omega 6 ( 10) 6571 -6581

9
2021
The role of estrogens in the adipose tissue milieu.

John R. Bracht , Victoria J. Vieira‐Potter , Roberta De Souza Santos , Orhan K. Öz
Annals of the New York Academy of Sciences 1461 ( 1) 127 -143

11
2020
Regulation of lin-4 miRNA expression, organismal growth and development by a conserved RNA binding protein in C. elegans

John R. Bracht , Priscilla M. Van Wynsberghe , Vanessa Mondol , Amy E. Pasquinelli
Developmental Biology 348 ( 2) 210 -221

18
2010
Chromosome fusions triggered by noncoding RNA

John R. Bracht , Xing Wang , Keerthi Shetty , Xiao Chen
RNA Biology 14 ( 5) 620 -631

8
2017
Synthesis of a eukaryotic chromosome reveals a role for N6-methyladenine in nucleosome organization

Leslie Y. Beh , Galia T. Debelouchina , Kelsi A. Lindblad , Katarzyna Kulej
bioRxiv 184929

2017
Novel Sequence Discovery by Subtractive Genomics.

Kathryn C. Asalone , Megan M. Nelson , John R. Bracht
Journal of Visualized Experiments ( 143)

2
2019
Thousands of RNA-cached copies of whole chromosomes are present in the ciliate Oxytricha during development.

April E. Williams , Laura F. Landweber , Kelsi A. Lindblad , John R. Bracht
RNA 23 ( 8) 1200 -1208

11
2017
Epigenetic Regulation of Neuregulin-1 Tunes White Adipose Stem Cell Differentiation.

Alyssa D. Cordero , Evan C. Callihan , Rana Said , Yasir Alowais
Cells 9 ( 5) 1148

1
2020
Rapid molecular detection of macrolide resistance

Megan M. Nelson , Christopher L. Waldron , John R. Bracht
BMC Infectious Diseases 19 ( 1) 144

4
2019
Reconstitution of eukaryotic chromosomes and manipulation of DNA N6-methyladenine alters chromatin and gene expression

Leslie Y. Beh , Galia T. Debelouchina , Derek M. Clay , Robert E. Thompson
bioRxiv 475384

2018
The genome of a subterrestrial nematode reveals an evolutionary strategy for adaptation to heat

Deborah J. Weinstein , Sarah E. Allen , Maggie C. Y. Lau , Mariana Erasmus
bioRxiv 747584

1
2019
The Oxytricha trifallax Macronuclear Genome: A Complex Eukaryotic Genome with 16,000 Tiny Chromosomes

Estienne C. Swart , John R. Bracht , Vincent Magrini , Patrick Minx
PLoS Biology 11 ( 1) e1001473

147
2013
Discovery of the First Germline-Restricted Gene by Subtractive Transcriptomic Analysis in the Zebra Finch, Taeniopygia guttata

Michelle K. Biederman , Megan M. Nelson , Kathryn C. Asalone , Alyssa L. Pedersen
Current Biology 28 ( 10) 1620

20
2018
The genome of a subterrestrial nematode reveals adaptations to heat

Deborah J. Weinstein , Sarah E. Allen , Maggie C. Y. Lau , Mariana Erasmus
Nature Communications 10 ( 1) 5268

4
2019
RNA-Mediated Somatic Genome Rearrangement in Ciliates

John R. Bracht
Somatic Genome Variation in Animals, Plants, and Microorganisms 167 -198

1
2017
Programmed Genome Processing in Ciliates

Aaron David Goldman , Elizabeth M. Stein , John R. Bracht , Laura F. Landweber
Discrete and Topological Models in Molecular Biology 273 -287

1
2014