Building Gold Standard Corpora for Medical Natural Language Processing Tasks

Laura Stoutenborough , Michal Kouril , Imre Solti , Keith Marsolo
american medical informatics association annual symposium 2012 144 -153

95
2012
EMR-linked GWAS study: investigation of variation landscape of loci for body mass index in children

Bahram Namjou , Mehdi Keddache , Keith Marsolo , Michael Wagner
Frontiers in Genetics 4 268 -268

34
2013
Mining FDA drug labels for medical conditions.

Qi Li , Louise Deleger , Todd Lingren , Haijun Zhai
BMC Medical Informatics and Decision Making 13 ( 1) 53 -53

26
2013
A GWAS Study on Liver Function Test Using eMERGE Network Participants.

Bahram Namjou , Keith Marsolo , Todd Lingren , Marylyn D. Ritchie
PLOS ONE 10 ( 9)

15
2015
Decentralized and reproducible geocoding and characterization of community and environmental exposures for multisite studies.

Cole Brokamp , Chris Wolfe , Todd Lingren , John Harley
Journal of the American Medical Informatics Association 25 ( 3) 309 -314

21
2018
Designing and evaluating an automated system for real-time medication administration error detection in a neonatal intensive care unit

Yizhao Ni , Todd Lingren , Eric S Hall , Matthew Leonard
Journal of the American Medical Informatics Association 25 ( 5) 555 -563

12
2018
Harmonizing Clinical Sequencing and Interpretation for the eMERGE III Network

Hana Zouk , Eric Venner , Niall J Lennon , Donna M Muzny
The American Journal of Human Genetics 105 ( 3) 588 -605

84
2019
Electronic medical records as a replacement for prospective research data collection in postoperative pain and opioid response studies

Todd Lingren , Senthilkumar Sadhasivam , Xue Zhang , Keith Marsolo
International Journal of Medical Informatics 111 45 -50

3
2018
Leveraging Food and Drug Administration Adverse Event Reports for the Automated Monitoring of Electronic Health Records in a Pediatric Hospital.

Huaxiu Tang , Imre Solti , Eric Kirkendall , Haijun Zhai
Biomedical informatics insights 9 ( 9) 1178222617713018 -1178222617713018

5
2017
A sequence labeling approach to link medications and their attributes in clinical notes and clinical trial announcements for information extraction.

Laura Stoutenborough , Imre Solti , Qi Li , Haijun Zhai
Journal of the American Medical Informatics Association 20 ( 5) 915 -921

16
2013
79
2014
Developing and evaluating an automated appendicitis risk stratification algorithm for pediatric patients in the emergency department

Louise Deleger , Holly Brodzinski , Haijun Zhai , Qi Li
Journal of the American Medical Informatics Association 20

32
2013
Automated clinical trial eligibility prescreening: increasing the efficiency of patient identification for clinical trials in the emergency department.

Yizhao Ni , Stephanie Kennebeck , Judith W Dexheimer , Constance M McAneney
Journal of the American Medical Informatics Association 22 ( 1) 166 -178

45
2015
Web 2.0-Based Crowdsourcing for High-Quality Gold Standard Development in Clinical Natural Language Processing

Haijun Zhai , Todd Lingren , Louise Deleger , Qi Li
Journal of Medical Internet Research 15 ( 4)

102
2013
Desiderata for computable representations of electronic health records-driven phenotype algorithms

Huan Mo , William K Thompson , Luke V Rasmussen , Jennifer A Pacheco
Journal of the American Medical Informatics Association 22 ( 6) 1220 -1230

72
2015
PheKB: A catalog and workflow for creating electronic phenotype algorithms for transportability

Jacqueline C Kirby , Peter Speltz , Luke V Rasmussen , Melissa Basford
Journal of the American Medical Informatics Association 23 ( 6) 1046 -1052

146
2016