Rule-Based Modeling and Model Refinement

Elaine Murphy , Vincent Danos , Jérôme Féret , Jean Krivine
Elements of Computational Systems Biology 83 -114

17
2010
Investigation of a Biological Repair Scheme

Vincent Danos , Jérôme Féret , Walter Fontana , Russell Harmer
Membrane Computing 5391 1 -12

4
2009
OS-102 A rule-based multiscale model of hepatic stellate cell plasticity: critical role of the inactivation loop in fibrosis progression

Matthieu Bougueon , Vincent Legagneux , Octave Hazard , Jérémy Bomo
Journal of Hepatology 80 S64 -S64

2024
Accessible Pattern Analyses in Kappa Models

Jérôme FERET
Symbolic Approaches to Modeling and Analysis of Biological Systems 313 -313

2023
Rule-Based Modelling and Model Perturbation

Jean Krivine , Walter Fontana , Jérôme Feret , Vincent Danos
Transactions on Computational Systems Biology 11 116 -137

65
2009
Graphs, Rewriting and Pathway Reconstruction for Rule-Based Models

Glynn Winskel , Jean Krivine , Walter Fontana , Jérôme Feret
foundations of software technology and theoretical computer science 18 276 -288

67
2012
Astrée: Proving the Absence of Runtime Errors

Laurent Mauborgne , Xavier Rival , Xavier Rival , Xavier Rival
Embedded real time software and systems - ERTS2 2010

21
2010
Proceedings of the 2nd International Workshop on Static Analysis and Systems Biology (SASB 2011)

Jérôme Feret , Andre Levchenko
international workshop static analysis systems biology 284 137

2012
Space Software Validation using Abstract Interpretation

Olivier Bouissou , Laurent Mauborgne , Xavier Rival , Sylvie Putot
The International Space System Engineering Conference : Data Systems in Aerospace - DASIA 2009 1 1 -7

29
2009
Stochastic Fragments : a Framework for the Exact Reduction of the Stochastic Semantics of Rule-Based Models

Heinz Koeppl , Jérôme Feret , Tatjana Petrov
International Journal of Software and Informatics 7 ( 4) 527 -604

23
2013
Astrée: Nachweis der Abwesenheit von Laufzeitfehlern.

Laurent Mauborgne , Xavier Rival , Stefana Nenova , Jérôme Feret
Workshop "Entwicklung zuverlässiger Software-Systeme"

1
2009
Using alternated sums to express the occurrence number of extended patterns in site-graphs

Jérôme Feret , Ferdinanda Camporesi
international workshop static analysis systems biology 18

2017
Formal derivation of qualitative dynamical models from biochemical networks.

Wassim Abou-Jaoudé , Denis Thieffry , Jérôme Feret
BioSystems 149 70 -112

10
2016
Combinatorial Complexity and Compositional Drift in Protein Interaction Networks

Eric J. Deeds , Jean Krivine , Jérôme Feret , Vincent Danos
PLoS ONE 7 ( 3) e32032 -14

56
2012
Context-Sensitive Flow Analyses: A Hierarchy of Model Reductions

Ferdinanda Camporesi , Jérôme Feret , Jonathan Hayman
computational methods in systems biology 220 -233

4
2013
Abstract Interpretation-Based Static Analysis of Mobile Ambients

Jérôme Feret
static analysis symposium 412 -430

34
2001
Scalable simulation of cellular signaling networks

Vincent Danos , Jérôme Feret , Walter Fontana , Jean Krivine
asian symposium on programming languages and systems 4807 139 -157

194
2007
Occurrence Counting Analysis for the π-calculus

Jérôme Feret
Electronic Notes in Theoretical Computer Science 39 ( 2) 1 -18

34
2000
Static Analysis of Digital Filters

Jérôme Feret
european symposium on programming 33 -48

128
2004