Sustainable data analysis with Snakemake.

Sven Nahnsen , Sven O. Twardziok , Vanessa Sochat , Andreas Wilm
F1000Research 10 33 -33

375
2021
BlastR--fast and accurate database searches for non-coding RNAs.

Giovanni Bussotti , Emanuele Raineri , Ionas Erb , Matthias Zytnicki
Nucleic Acids Research 39 ( 16) 6886 -6895

27
2011
Human pharyngeal microbiota in age-related macular degeneration.

Eliza Xin Pei Ho , Chui Ming Gemmy Cheung , Shuzhen Sim , Collins Wenhan Chu
PLOS ONE 13 ( 8)

12
2018
Species Identification and Profiling of Complex Microbial Communities Using Shotgun Illumina Sequencing of 16S rRNA Amplicon Sequences

Swee Hoe Ong , Vinutha Uppoor Kukkillaya , Andreas Wilm , Christophe Lay
PLOS ONE 8 ( 4)

111
2013
A Randomized, Double-Blind Placebo Controlled Trial of Balapiravir, a Polymerase Inhibitor, in Adult Dengue Patients

Nguyet Minh Nguyen , Chau Nguyen Bich Tran , Lam Khanh Phung , Kien Thi Hue Duong
The Journal of Infectious Diseases 207 ( 9) 1442 -1450

217
2013
Whole metagenome profiling reveals skin microbiome-dependent susceptibility to atopic dermatitis flare.

Kern Rei Chng , Angeline Su Ling Tay , Chenhao Li , Amanda Hui Qi Ng
Nature microbiology 1 ( 9) 16106

149
2016
BAsE-Seq: a method for obtaining long viral haplotypes from short sequence reads

Martin L Hibberd , Stephen R Quake , William F Burkholder , Lewis Z Hong
Genome Biology 15 ( 11) 517 -517

43
2014
LoFreq: a sequence-quality aware, ultra-sensitive variant caller for uncovering cell-population heterogeneity from high-throughput sequencing datasets

Andreas Wilm , Pauline Poh Kim Aw , Denis Bertrand , Grace Hui Ting Yeo
Nucleic Acids Research 40 ( 22) 11189 -11201

975
2012
Genomic landscape of lung adenocarcinoma in East Asians

Jianbin Chen , Hechuan Yang , Audrey Su Min Teo , Lidyana Bte Amer
Nature Genetics 52 ( 2) 177 -186

209
2020
Can skin microbes predispose you to eczema?

Kern Rei Ng , Angeline Tay , Chanhao Li , Amanda Ng
Journal of Dermatological Science 86 ( 2) e94 -e95

2017
Making automated multiple alignments of very large numbers of protein sequences

Fabian Sievers , David Dineen , Andreas Wilm , Desmond G. Higgins
Bioinformatics 29 ( 8) 989 -995

48
2013
An enhanced RNA alignment benchmark for sequence alignment programs

Andreas Wilm , Indra Mainz , Gerhard Steger
Algorithms for Molecular Biology 1 ( 1) 19 -19

126
2006
Sequence embedding for fast construction of guide trees for multiple sequence alignment

Gordon Blackshields , Fabian Sievers , Weifeng Shi , Andreas Wilm
Algorithms for Molecular Biology 5 ( 1) 21 -21

80
2010
Analysis of Dengue Virus Genetic Diversity during Human and Mosquito Infection Reveals Genetic Constraints

October M. Sessions , Andreas Wilm , Uma Sangumathi Kamaraj , Milly M. Choy
PLOS Neglected Tropical Diseases 9 ( 9) e0004044

41
2015
Tracking Dengue Virus Intra-host Genetic Diversity during Human-to-Mosquito Transmission

Shuzhen Sim , Pauline P. K. Aw , Andreas Wilm , Garrett Teoh
PLOS Neglected Tropical Diseases 9 ( 9) e0004052

53
2015
In Vivo Mapping of Eukaryotic RNA Interactomes Reveals Principles of Higher-Order Organization and Regulation.

Jong Ghut Ashley Aw , Yang Shen , Andreas Wilm , Miao Sun
Molecular Cell 62 ( 4) 603 -617

268
2016
Structure mapping of dengue and Zika viruses reveals functional long-range interactions

Roland G Huber , Xin Ni Lim , Wy Ching Ng , Adelene YL Sim
Nature Communications 10 ( 1) 1408

44
2019
Fast, scalable generation of high‐quality protein multiple sequence alignments using Clustal Omega

Fabian Sievers , Andreas Wilm , David Dineen , Toby J Gibson
Molecular Systems Biology 7 ( 1) 539 -539

2
2011
Next-Generation Whole Genome Sequencing of Dengue Virus

Pauline Poh Kim Aw , Paola Florez de Sessions , Andreas Wilm , Long Truong Hoang
Dengue 1138 175 -195

15
2014
Single-virion sequencing of lamivudine-treated HBV populations reveal population evolution dynamics and demographic history.

Yuan O. Zhu , Pauline P. K. Aw , Paola Florez de Sessions , Shuzhen Hong
BMC Genomics 18 ( 1) 1 -12

7
2017