Karsten Hokamp
机构: Bioinformatics Research Officer, Smurfit Institute of Genetics, Trinity College Dublin
每年引用次数
引用次数
引用: 38,392
H-指数: 41
I10-指数 : 70
出版物: 101
MiR-182 and miR-96 co-regulate Rac1 expression in the mouse retina
Karsten Hokamp , Paul Kenna , Stefanie M Hauck , Sophia Millington-Ward
Investigative Ophthalmology & Visual Science 56 ( 7) 4672 -4672
2015
InnateDB: facilitating systems-level analyses of the mammalian innate immune response
Avinash Chikatamarla , Tamara Munzner , Karsten Hokamp , Michael Acab
417
2008
miRNA regulation and potential interactors of Rac1 in the mouse retina
Karsten Hokamp , Stefanie M Hauck , Matthew Carrigan , Arpad Palfi
Investigative Ophthalmology & Visual Science 57 ( 12) 4801 -4801
2016
The human tRNA-guanine transglycosylase displays promiscuous nucleobase preference but strict tRNA specificity.
Mathias O Senge , Karsten Hokamp , Stephen J Connon , Vincent P Kelly
Nucleic Acids Research 49 ( 9) 4877 -4890
2021
Global Chromatin Changes Resulting from Single-Gene Inactivation-The Role of SMARCB1 in Malignant Rhabdoid Tumor.
Elaine O’Meara , Maureen J. O’Sullivan , Mevlüt Ulaş , Colin Kenny
Cancers 13 ( 11) 2561
2021
The 2016 Bioinformatics Open Source Conference (BOSC)
Nomi L. Harris , Peter J.A. Cock , Brad Chapman , Christopher J. Fields
F1000Research 5 2464
1
2016
Global Gene Expression and Systems Biology Analysis of Bovine Monocyte-Derived Macrophages in Response to In Vitro Challenge with Mycobacterium bovis
David A. Magee , Maria Taraktsoglou , Kate E. Killick , Nicolas C. Nalpas
PLoS ONE 7 ( 2) e32034
40
2012
The 2018 Bioinformatics Open Source Conference (GCCBOSC 2018).
Nomi L. Harris , Heather Wiencko , Brad Chapman , Peter J.A. Cock
F1000Research 7 1309
1
2018
Delineating transcriptional networks of prognostic gene signatures refines treatment recommendations for lymph node-negative breast cancer patients
Fiona Lanigan , Gerard L Brien , Yue Fan , Stephen F Madden
FEBS Journal 282 ( 18) 3455 -3473
7
2015
The 2015 Bioinformatics Open Source Conference (BOSC 2015)
Nomi L. Harris , Peter J. A. Cock , Hilmar Lapp , Brad Chapman
PLOS Computational Biology 12 ( 2) e1004691
3
2016
Bovine and human cathelicidin cationic host defense peptides similarly suppress transcriptional responses to bacterial lipopolysaccharide.
Neeloffer Mookherjee , Heather L. Wilson , Silvana Doria , Yurij Popowych
Journal of Leukocyte Biology 80 ( 6) 1563 -1574
98
2006
The Impact of 18 Ancestral and Horizontally-Acquired Regulatory Proteins upon the Transcriptome and sRNA Landscape of Salmonella enterica serovar Typhimurium
Aoife M. Colgan , Carsten Kröger , Médéric Diard , Wolf-Dietrich Hardt
PLOS Genetics 12 ( 8)
69
2016
An Infection-Relevant Transcriptomic Compendium for Salmonella enterica Serovar Typhimurium
Carsten Kröger , Aoife Colgan , Shabarinath Srikumar , Kristian Händler
Cell Host & Microbe 14 ( 6) 683 -695
269
2013
CD10-/ALDH- cells are the sole cisplatin-resistant component of a novel ovarian cancer stem cell hierarchy.
Michael F Gallagher , Brendan Ffrench , Claudia Gasch , Karsten Hokamp
Cell Death and Disease 8 ( 10)
8
2017
Lower Density and Shorter Duration of Nasopharyngeal Carriage by Pneumococcal Serotype 1 (ST217) May Explain Its Increased Invasiveness over Other Serotypes.
Laura Bricio-Moreno , Chrispin Chaguza , Reham Yahya , Rebecca K. Shears
Mbio 11 ( 6)
1
2020
Circadian control of innate immunity in macrophages by miR-155 targeting Bmal1
Anne M. Curtis , Caio T. Fagundes , Guangrui Yang , Eva M. Palsson-McDermott
Proceedings of the National Academy of Sciences of the United States of America 112 ( 23) 7231 -7236
247
2015
RNA-seq Brings New Insights to the Intra-Macrophage Transcriptome of Salmonella Typhimurium
Shabarinath Srikumar , Carsten Kröger , Magali Hébrard , Aoife Colgan
PLOS Pathogens 11 ( 11) e1005262
136
2015
The WalRK (YycFG) and σIRsgI regulators cooperate to control CwlO and LytE expression in exponentially growing and stressedBacillus subtiliscells
Letal I. Salzberg , Leagh Powell , Karsten Hokamp , Eric Botella
Molecular Microbiology 87 ( 1) 180 -195
34
2013
Extensive genomic duplication during early chordate evolution
Aoife McLysaght , Karsten Hokamp , Kenneth H. Wolfe
Nature Genetics 31 ( 2) 200 -204
475
2002
microRNA regulatory circuits in a mouse model of inherited retinal degeneration.
Arpad Palfi , Karsten Hokamp , Stefanie M. Hauck , Sebastian Vencken
Scientific Reports 6 ( 1) 31431 -31431
18
2016
Jay Hinton Carsten Kröger Fiona Brinkman Robert E. W. Hancock Kenneth H. Wolfe David MacHugh Lorne Babiuk Andrew DS Cameron Charles J Dorman John Browne Eamonn Gormley Rocío Canals Alvarez, PhD Arpad Palfi Aoife McLysaght Stephen V. Gordon Brendan Loftus Neeloffer Mookherjee Jennifer Bryan Shabarinath Srikumar Dawn Bowdish