The functional importance of telomere clustering: Global changes in gene expression result from SIR factor dispersion

A. Taddei , G. Van Houwe , S. Nagai , I. Erb
Genome Research 19 ( 4) 611 -625

108
2009
SwissRegulon: a database of genome-wide annotations of regulatory sites

M. Pachkov , I. Erb , N. Molina , E. van Nimwegen
Nucleic Acids Research 35 127 -131

121
2007
Use of ChIP-Seq data for the design of a multiple promoter-alignment method

Giovanni Bussotti , Eduardo Eyras , Cedric Notredame , Ionas Erb
F1000Research 3

2012
BlastR--fast and accurate database searches for non-coding RNAs.

Giovanni Bussotti , Emanuele Raineri , Ionas Erb , Matthias Zytnicki
Nucleic Acids Research 39 ( 16) 6886 -6895

27
2011
Examining microbe-metabolite correlations by linear methods.

Thomas P. Quinn , Ionas Erb
Nature Methods 18 ( 1) 37 -39

3
2021
Impaired development of neocortical circuits contributes to the neurological alterations in DYRK1A haploinsufficiency syndrome

Juan Arranz , Elia Balducci , Krisztina Arató , Gentzane Sánchez-Elexpuru
Neurobiology of Disease 127 210 -222

12
2019
Extinction and reinstatement of an operant responding maintained by food in different models of obesity.

Aurelijus Burokas , Elena Martín-García , Jose Espinosa-Carrasco , Ionas Erb
Addiction Biology 23 ( 2) 544 -555

9
2018
Time-course and dynamics of obesity-related behavioral changes induced by energy-dense foods in mice.

Jose Espinosa-Carrasco , Aurelijus Burokas , Marta Fructuoso , Ionas Erb
Addiction Biology 23 ( 2) 531 -543

8
2018
Genome and transcriptome analysis of the Mesoamerican common bean and the role of gene duplications in establishing tissue and temporal specialization of genes

Anna Vlasova , Salvador Capella-Gutiérrez , Martha Rendón-Anaya , Miguel Hernández-Oñate
Genome Biology 17 ( 1) 32 -32

101
2016
Extreme genomic erosion after recurrent demographic bottlenecks in the highly endangered Iberian lynx

Guglielmo Roma , Cedric Notredame , Thomas Mailund , M. Mar Albà
Genome Biology 17 ( 1) 251

74
2016
Differential Proportionality - A Normalization-Free Approach To Differential Gene Expression

Ionas Erb , Thomas Quinn , David Lovell , Cedric Notredame
bioRxiv 134536

16
2017
On a Notion of Linear Replicator Equations

Nihat Ay , Ionas Erb
Journal of Dynamics and Differential Equations 17 ( 2) 427 -451

15
2005
Pergola: Boosting Visualization and Analysis of Longitudinal Data by Unlocking Genomic Analysis Tools

Jose Espinosa-Carrasco , Ionas Erb , Toni Hermoso Pulido , Julia Ponomarenko
iScience 9 244 -257

4
2018
MotEvo: integrated Bayesian probabilistic methods for inferring regulatory sites and motifs on multiple alignments of DNA sequences.

Phil Arnold , Ionas Erb , Mikhail Pachkov , Nacho Molina
Bioinformatics 28 ( 4) 487 -494

62
2012
Pergola-web: a web server for the visualization and analysis of longitudinal behavioral data using repurposed genomics tools and standards.

Jose Espinosa-Carrasco , Toni Hermoso Pulido , Ionas Erb , Mara Dierssen
Nucleic Acids Research 47

1
2019
Amalgams: data-driven amalgamation for the dimensionality reduction of compositional data.

Thomas P Quinn , Ionas Erb
NAR Genomics and Bioinformatics 2 ( 4)

4
2020
5
2013