Illuminating the Genetic Foundation and Cost of Horse Domestication with Ancient DNA

Mikkel Schubert , Hákon Jónsson , Dan Chang , Clio Der Sarkissian
Plant and Animal Genome XXIII Conference

2015
Ancient genomic changes associated with domestication of the horse

Pablo Librado , Cristina Gamba , Charleen Gaunitz , Clio Der Sarkissian
Science 356 ( 6336) 442 -445

104
2017
Ancient genomes revisit the ancestry of domestic and Przewalski’s horses

Charleen Gaunitz , Antoine Fages , Kristian Hanghøj , Anders Albrechtsen
Science 360 ( 6384) 111 -114

307
2018
Ligation Bias in Illumina Next-Generation DNA Libraries: Implications for Sequencing Ancient Genomes

Andaine Seguin-Orlando , Mikkel Schubert , Joel Clary , Julia Stagegaard
PLoS ONE 8 ( 10) e78575

61
2013
Horse Y chromosome assembly displays unique evolutionary features and putative stallion fertility genes

Jan E. Janečka , Brian W. Davis , Sharmila Ghosh , Nandina Paria
Nature Communications 9 ( 1) 2945

28
2018
Genomic Characterization of a South American Phytophthora Hybrid Mandates Reassessment of the Geographic Origins of Phytophthora infestans

Michael D Martin , Filipe G Vieira , Simon YW Ho , Nathan Wales
Molecular Biology and Evolution 33 ( 2) 478 -491

34
2016
Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horse.

Ludovic Orlando , Aurélien Ginolhac , Guojie Zhang , Duane Froese
Nature 499 ( 7456) 74 -78

545
2013
mapDamage2.0: fast approximate Bayesian estimates of ancient DNA damage parameters

Hákon Jónsson , Aurélien Ginolhac , Mikkel Schubert , Philip L. F. Johnson
Bioinformatics 29 ( 13) 1682 -1684

648
2013
Evolutionary Genomics and Conservation of the Endangered Przewalski's Horse.

Clio Der Sarkissian , Luca Ermini , Mikkel Schubert , Melinda A. Yang
Current Biology 25 ( 19) 2577 -2583

107
2015
Zonkey: A simple, accurate and sensitive pipeline to genetically identify equine F1-hybrids in archaeological assemblages

Mikkel Schubert , Marjan Mashkour , Charleen Gaunitz , Antoine Fages
Journal of Archaeological Science 78 147 -157

20
2017
High-Throughput DNA sequencing of ancient wood

Stefanie Wagner , Frédéric Lagane , Andaine Seguin-Orlando , Mikkel Schubert
Molecular Ecology 27 ( 5) 1138 -1154

34
2018
Improving ancient DNA read mapping against modern reference genomes

Mikkel Schubert , Aurelien Ginolhac , Stinus Lindgreen , John F Thompson
BMC Genomics 13 ( 1) 178 -178

172
2012
Developing a 670k genotyping array to tag ~2M SNPs across 24 horse breeds.

Robert J. Schaefer , Mikkel Schubert , Ernest Bailey , Danika L. Bannasch
BMC Genomics 18 ( 1) 565

54
2017
Early divergent strains of Yersinia pestis in Eurasia 5,000 years ago.

Simon Rasmussen , Morten Erik Allentoft , Kasper Nielsen , Ludovic Orlando
Cell 163 ( 3) 571 -582

245
2015
Speciation with Gene Flow in Equids Despite Extensive Chromosomal Plasticity

Hákon Jónsson , Mikkel Schubert , Andaine Seguin-Orlando , Aurélien Ginolhac
Proceedings of the National Academy of Sciences of the United States of America 111 ( 52) 18655 -18660

122
2014
Prehistoric genomes reveal the genetic foundation and cost of horse domestication

Mikkel Schubert , Hákon Jónsson , Dan Chang , Clio Der Sarkissian
Proceedings of the National Academy of Sciences of the United States of America 111 ( 52) 201416991

296
2014
Characterization of ancient and modern genomes by SNP detection and phylogenomic and metagenomic analysis using PALEOMIX

Mikkel Schubert , Luca Ermini , Clio Der Sarkissian , Hákon Jónsson
Nature Protocols 9 ( 5) 1056 -1082

210
2014
BCAT1 and BCAT2 disruption in CHO cells has cell line-dependent effects.

Sara Pereira , Daniel Ley , Mikkel Schubert , Lise Marie Grav
Journal of Biotechnology 306 24 -31

2019
AdapterRemoval v2: rapid adapter trimming, identification, and read merging.

Mikkel Schubert , Stinus Lindgreen , Ludovic Orlando
BMC Research Notes 9 ( 1) 88 -88

1,044
2016
Tracking the origins of Yakutian horses and the genetic basis for their fast adaptation to subarctic environments

Pablo Librado , Clio Der Sarkissian , Luca Ermini , Mikkel Schubert
Proceedings of the National Academy of Sciences of the United States of America 112 ( 50) 201513696

153
2015