Extraction and analysis of signatures from the Gene Expression Omnibus by the crowd

Zichen Wang , Caroline D Monteiro , Kathleen M Jagodnik , Nicolas F Fernandez
F1000Research 5

222
2016
Prioritizing Pain-Associated Targets with Machine Learning.

Avi Ma'ayan , Minji Jeon , Daniel J Stein , Kathleen M Jagodnik
Biochemistry 60 ( 18) 1430 -1446

1
2021
EnrichrBot: Twitter bot tracking tweets about human genes.

Alon Bartal , Alexander Lachmann , Daniel J B Clarke , Allison H Seiden
Bioinformatics 36 ( 12) 3932 -3934

2020
ChEA3: transcription factor enrichment analysis by orthogonal omics integration.

Alexandra B Keenan , Denis Torre , Alexander Lachmann , Ariel K Leong
Nucleic Acids Research 47

293
2019
Drug Gene Budger (DGB): an application for ranking drugs to modulate a specific gene based on transcriptomic signatures.

Zichen Wang , Edward He , Kevin Sani , Kathleen M Jagodnik
Bioinformatics 35 ( 7) 1247 -1248

11
2019
Role-aware information spread in online social networks

Alon Bartal , Kathleen M Jagodnik
Entropy 23 ( 11) 1542

3
2021
Correcting under-reported COVID-19 case numbers: estimating the true scale of the pandemic

Kathleen M Jagodnik , Forest Ray , Federico M Giorgi , Alexander Lachmann
medRxiv 2020 -03

38
2020
Utilizing AI and Social Media Analytics to Discover Adverse Side Effects of GLP-1 Receptor Agonists

Alon Bartal , Kathleen M Jagodnik , Nava Pliskin , Abraham Seidmann
arXiv preprint arXiv:2404.01358

2024
SigCom LINCS: data and metadata search engine for a million gene expression signatures

John Erol Evangelista , Daniel JB Clarke , Zhuorui Xie , Alexander Lachmann
Nucleic acids research 50 ( W1) W697 -W709

34
2022
Getting Started with LINCS Datasets and Tools

Zhuorui Xie , Eryk Kropiwnicki , Megan L Wojciechowicz , Kathleen M Jagodnik
Current Protocols 2 ( 7) e487 -e487

7
2022
The COVID-19 drug and gene set library

Maxim V Kuleshov , Daniel J Stein , Daniel JB Clarke , Eryk Kropiwnicki
Patterns 1 ( 6) 100090 -100090

78
2020
DrugShot: querying biomedical search terms to retrieve prioritized lists of small molecules

Eryk Kropiwnicki , Alexander Lachmann , Daniel JB Clarke , Zhuorui Xie
BMC bioinformatics 23 ( 1) 76 -76

5
2022
D2H2: diabetes data and hypothesis hub

Giacomo B Marino , Nasheath Ahmed , Zhuorui Xie , Kathleen M Jagodnik
Bioinformatics Advances 3 ( 1) vbad178 -vbad178

2023
ONLINE SUPPORTING MATERIALS D2H2: Diabetes and Data and Hypothesis Hub

Giacomo B Marino , Nasheath Ahmed , Zhuorui Xie , Kathleen M Jagodnik

Training an actor-critic reinforcement learning controller for arm movement using human-generated rewards

Kathleen M Jagodnik , Philip S Thomas , Antonie J van den Bogert , Michael S Branicky
IEEE Transactions on Neural Systems and Rehabilitation Engineering 25 ( 10) 1892 -1905

67
2017
Identifying women with postdelivery posttraumatic stress disorder using natural language processing of personal childbirth narratives

Alon Bartal , Kathleen M Jagodnik , Sabrina J Chan , Mrithula S Babu
American Journal of Obstetrics & Gynecology MFM 5 ( 3) 100834 -100834

18
2023
Screening for post-traumatic stress disorder following childbirth using the Peritraumatic Distress Inventory

Kathleen M Jagodnik , Tsachi Ein-Dor , Sabrina J Chan , Adi Titelman Ashkenazy
Journal of Affective Disorders 348 17 -25

8
2024
The role of the hypothalamic-pituitary-adrenal axis in depression across the female reproductive lifecycle: current knowledge and future directions

Liisa Hantsoo , Kathleen M Jagodnik , Andrew M Novick , Ritika Baweja
Frontiers in Endocrinology 14 1295261 -1295261

5
2023
A systematic review of interventions for prevention and treatment of post-traumatic stress disorder following childbirth

Sharon Dekel , Joanna E Papadakis , Beatrice Quagliarini , Kathleen M Jagodnik
Medrxiv

5
2023