Benjamin P Berman
机构: Associate Professor, The Hebrew University of Jerusalem School of Medicine
每年引用次数
引用次数
引用: 52,065
H-指数: 53
I10-指数 : 74
出版物: 128
FOXC1 Activates Smoothened-Independent Hedgehog Signaling in Basal-like Breast Cancer
Bingchen Han , Ying Qu , Yanli Jin , Yi Yu
Cell Reports 13 ( 5) 1046 -1058
80
2015
Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samples.
William U Meyerson , Lewis Jonathan Dursi , Liang-Bo Wang , Guanlan Dong
Nature Communications 11 ( 1) 4748
4
2020
Role of citrullination in diagnosing diseases
Jennifer Van Eyk , Benjamin Phillip Berman , Justyna Fert-Bober , Ronald Holewinski
1
2016
Role of citrullination in diagnosing diseases
Jennifer Van Eyk , FERT-BOBER Justyna , Erin Crowgey , Ronald Holewinski
1
2021
ROLE OF CITRULLINATION IN THE DIAGNOSIS OF ILLNESSES
Jennifer Van Eyk , FERT-BOBER Justyna , Erin Crowgey , Ronald HOLEWINSKI
2019
A pan-cancer analysis of CpG Island gene regulation reveals extensive plasticity within Polycomb target genes
Yueyuan Zheng , Guowei Huang , Tiago C Silva , Qian Yang
Nature Communications 12 ( 1) 2485 -2485
2021
Exploring the cancer methylome
Benjamin P Berman , Daniel J Weisenberger , Toshinori Hinoue , Houtan Noushmehr
BMC Proceedings 6 ( 6) 1 -1
2012
The PsychENCODE project
Schahram Akbarian , Chunyu Liu , James A Knowles , Flora M Vaccarino
Nature Neuroscience 18 ( 12) 1707 -1712
265
2015
Global loss of DNA methylation uncovers intronic enhancers in genes showing expression changes
Adam Blattler , Lijing Yao , Heather Witt , Yu Guo
Genome Biology 15 ( 9) 469 -469
168
2014
Inferring regulatory element landscapes and transcription factor networks from cancer methylomes.
Lijing Yao , Hui Shen , Peter W Laird , Peggy J Farnham
Genome Biology 16 ( 1) 105 -105
115
2015
Global analysis of patterns of gene expression during Drosophila embryogenesis
Pavel Tomancak , Benjamin P Berman , Amy Beaton , Richard Weiszmann
Genome Biology 8 ( 7) 1 -24
367
2007
Bis-SNP: Combined DNA methylation and SNP calling for Bisulfite-seq data
Yaping Liu , Kimberly D Siegmund , Peter W Laird , Benjamin P Berman
Genome Biology 13 ( 7) 1 -14
261
2012
Annotation of the Drosophila melanogaster euchromatic genome: a systematic review.
Sima Misra , Madeline A Crosby , Christopher J Mungall , Beverley B Matthews
Genome Biology 3 ( 12) 1 -22
457
2002
Computational identification of developmental enhancers: conservation and function of transcription factor binding-site clusters in Drosophila melanogaster and Drosophila pseudoobscura.
Benjamin P Berman , Barret D Pfeiffer , Todd R Laverty , Steven L Salzberg
Genome Biology 5 ( 9) 1 -24
276
2004
Super-enhancer-associated MEIS1 promotes transcriptional dysregulation in Ewing sarcoma in co-operation with EWS-FLI1.
Lehang Lin , Moli Huang , Xianping Shi , Anand Mayakonda
Nucleic Acids Research 47 ( 3) 1255 -1267
15
2019
Regions of focal DNA hypermethylation and long-range hypomethylation in colorectal cancer coincide with nuclear lamina–associated domains
Benjamin P Berman , Daniel J Weisenberger , Joseph F Aman , Toshinori Hinoue
Nature Genetics 44 ( 1) 40 -46
631
2012
Identification of distinct mutational patterns and new driver genes in oesophageal squamous cell carcinomas and adenocarcinomas.
De-Chen Lin , Huy Q Dinh , Jian-Jun Xie , Anand Mayakonda
Gut 67 ( 10) 1769 -1779
85
2018
Master transcription factors form interconnected circuitry and orchestrate transcriptional networks in oesophageal adenocarcinoma.
Li Chen , Moli Huang , Jasmine Plummer , Jian Pan
Gut 69 ( 4) 630 -640
19
2020
Locking in on the human methylome
Benjamin P Berman , Daniel J Weisenberger , Peter W Laird
Nature Biotechnology 27 ( 4) 341 -342
20
2009
Whole-genome bisulfite sequencing of a complex karyotype AML and identification of regulatory aberrations distinct from normal karyotype AML.
Stephen Capone , Timothy J. Triche , Gino In , Daniel J Weisenberger
Journal of Clinical Oncology 32 11075 -11075
2014
Peter W. Laird Simon G. Coetzee Tiago Chedraoui Silva Houtan Noushmehr De-Chen Lin, Ph.D Dennis J Hazelett Gerhard (Gerry) Coetzee Gerald M. Rubin Zachary H Ramjan Susan Celniker Peggy J. Farnham Huy Q. Dinh Yaping Liu lijing yao Wanding Zhou Peter A. Jones Terry Kelly FIDES D LAY Hui Shen Michael B. Eisen