Phylo-MCOA: a Fast and Efficient Method to Detect Outlier Genes and Species in Phylogenomics using Multiple Co-Inertia Analysis

D. M. de Vienne , S. Ollier , G. Aguileta
Molecular Biology and Evolution 29 ( 6) 1587 -1598

57
2012
A congruence index for testing topological similarity between trees

D. M. de Vienne , T. Giraud , O. C. Martin
Bioinformatics 23 ( 23) 3119 -3124

140
2007
In response to comment on ‘A congruence index for testing topological similarity between trees’

D. M. de Vienne , T. Giraud , O. C. Martin
Bioinformatics 25 ( 1) 150 -151

6
2009
Cospeciation vs host‐shift speciation: methods for testing, evidence from natural associations and relation to coevolution

D. M. de Vienne , G. Refrégier , M. López-Villavicencio , A. Tellier
New Phytologist 198 ( 2) 347 -385

241
2013
Isolation of 60 polymorphic microsatellite loci in EST libraries of four sibling species of the phytopathogenic fungal complex Microbotryum

T. GIRAUD , R. YOCKTENG , S. MARTHEY , H. CHIAPELLO
Molecular Ecology Resources 8 ( 2) 387 -392

24
2008
When can host shifts produce congruent host and parasite phylogenies? A simulation approach.

D. M. DE VIENNE , T. GIRAUD , J. A. SHYKOFF
Journal of Evolutionary Biology 20 ( 4) 1428 -1438

62
2007
Hybrid sterility and inviability in the parasitic fungal species complex Microbotryum

D. M. DE VIENNE , G. REFRÉGIER , M. E. HOOD , A. GUIGUE
Journal of Evolutionary Biology 22 ( 4) 683 -698

40
2009
Sex in Penicillium: Combined phylogenetic and experimental approaches

M. López-Villavicencio , G. Aguileta , T. Giraud , D.M. de Vienne
Fungal Genetics and Biology 47 ( 8) 693 -706

35
2010
Fungal evolutionary genomics provides insight into the mechanisms of adaptive divergence in eukaryotes.

Pierre Gladieux , Jeanne Ropars , Hélène Badouin , Antoine Branca
Molecular Ecology 23 ( 4) 753 -773

183
2014
Phylogenetic determinants of potential host shifts in fungal pathogens

D. M. de VIENNE , M. E. HOOD , T. GIRAUD
Journal of Evolutionary Biology 22 ( 12) 2532 -2541

82
2009
26
2018
Identification de complexes protéine-protéine par combinaison de classifieurs. Application à Escherichia coli

Thomas Bourquard , Damien M. de Vienne , Jérôme Azé
EGC 2013 - 13eme conférence Francophone sur l'Extraction et la Gestion des Connaissances 419 -430

2013
Global survey of mobile DNA horizontal transfer in arthropods reveals Lepidoptera as a prime hotspot

Daphné Reiss , Gladys Mialdea , Vincent Miele , Damien M. de Vienne
PLOS Genetics 15 ( 2) e1007965

15
2019
Multiple convergent supergene evolution events in mating-type chromosomes.

Sara Branco , Fantin Carpentier , Ricardo C. Rodríguez de la Vega , Hélène Badouin
Nature Communications 9 ( 1) 2000

40
2018
RiboDB Database: A Comprehensive Resource for Prokaryotic Systematics

Frédéric Jauffrit , Simon Penel , Stéphane Delmotte , Carine Rey
Molecular Biology and Evolution 33 ( 8) 2170 -2172

16
2016
Euclidean Nature of Phylogenetic Distance Matrices

Damien M. de Vienne , Gabriela Aguileta , Sébastien Ollier
Systematic Biology 60 ( 6) 826 -832

26
2011
Speciation in fungi

Tatiana Giraud , Guislaine Refrégier , Mickaël Le Gac , Damien M. de Vienne
Fungal Genetics and Biology 45 ( 6) 791 -802

329
2008
LINKAGE TO THE MATING-TYPE LOCUS ACROSS THE GENUS MICROBOTRYUM: INSIGHTS INTO NONRECOMBINING CHROMOSOMES

Elsa Petit , Tatiana Giraud , Damien M. de Vienne , Marco A. Coelho
Evolution 66 ( 11) 3519 -3533

27
2012
High Variability of Mitochondrial Gene Order among Fungi

Gabriela Aguileta , Damien M. de Vienne , Oliver N. Ross , Michael E. Hood
Genome Biology and Evolution 6 ( 2) 451 -465

114
2014