selscan: An Efficient Multithreaded Program to Perform EHH-Based Scans for Positive Selection

Z. A. Szpiech , R. D. Hernandez
Molecular Biology and Evolution 31 ( 10) 2824 -2827

276
2014
ADZE: a rarefaction approach for counting alleles private to combinations of populations

Z. A. Szpiech , M. Jakobsson , N. A. Rosenberg
Bioinformatics 24 ( 21) 2498 -2504

510
2008
Long Runs of Homozygosity Are Enriched for Deleterious Variation

Zachary A. Szpiech , Jishu Xu , Trevor J. Pemberton , Weiping Peng
American Journal of Human Genetics 93 ( 1) 90 -102

226
2013
VCF files associated with Macaca arctoides hybridization analysis

Laurie Stevison , Zachary Szpiech , Nick Bailey , Taylor Novak
The bear bones: mosaic ancestry of Macaca arctoides explains divergent baculum morphology

2
2021
GARLIC: Genomic Autozygosity Regions Likelihood-based Inference and Classification.

Zachary A Szpiech , Alexandra Blant , Trevor J Pemberton
Bioinformatics 33 ( 13) 2059 -2062

34
2017
Comparing Spatial Maps of Human Population-Genetic Variation Using Procrustes Analysis

Chaolong Wang , Zachary A Szpiech , James H Degnan , Mattias Jakobsson
Statistical Applications in Genetics and Molecular Biology 9 ( 1) 13

150
2010
The complete sequence and comparative analysis of ape sex chromosomes

Kateryna D Makova , Brandon D Pickett , Robert S Harris , Gabrielle A Hartley
Nature 1 -11

10
2024
A rarefaction approach for measuring population differences in rare and common variation

Daniel J Cotter , Elyssa F Hofgard , John Novembre , Zachary A Szpiech
Genetics 224 ( 2) iyad070 -iyad070

1
2023
Using genotype array data to compare multi-and single-sample variant calls and improve variant call sets from deep coverage whole-genome sequencing data

Suyash S Shringarpure , Rasika A Mathias , Ryan D Hernandez , Timothy D O’Connor
Bioinformatics 33 ( 8) 1147 -1153

7
2017
Sequencing of 53,831 diverse genomes from the NHLBI TOPMed Program.

Daniel Taliun , Daniel N Harris , Michael D Kessler , Jedidiah Carlson
Nature 590 ( 7845) 290 -299

829
2021
A genetic and linguistic analysis of the admixture histories of the islands of Cabo Verde

Romain Laurent , Zachary A Szpiech , Sergio S da Costa , Valentin Thouzeau
Elife 12 e79827 -e79827

1
2023
Genomic signatures of adaptation in native lizards exposed to human-introduced fire ants

Braulio A Assis , Alexis P Sullivan , Stephanie Marciniak , Christina M Bergey
bioRxiv 2023.09. 24.559217 -2023.09. 24.559217

2023
Genomes of the extinct Bachman’s warbler show high divergence and no evidence of admixture with other extant Vermivora warblers

Andrew W Wood , Zachary A Szpiech , Irby J Lovette , Brian Tilston Smith
Current Biology 33 ( 13) 2823 -2829. e4

2
2023
Evolution of genes involved in the unusual genitals of the bear macaque, Macaca arctoides

Laurie S Stevison , Nick P Bailey , Zachary A Szpiech , Taylor E Novak
Ecology and Evolution 12 ( 5) e8897 -e8897

2
2022
A spatially aware likelihood test to detect sweeps from haplotype distributions

Michael DeGiorgio , Zachary A Szpiech
PLoS genetics 18 ( 4) e1010134 -e1010134

11
2022
Genomic consequences of isolation and inbreeding in an island dingo population

Ana V Leon-Apodaca , Manoharan Kumar , Andres Del Castillo , Gabriel C Conroy
bioRxiv

1
2023
Comparing Evolutionary Rates Using An Exact Test for 2x2 Tables with Continuous Cell Entries

A Morgan Thompson , M Cyrus Maher , Lawrence H Uricchio , Zachary A Szpiech
arXiv preprint arXiv:1404.2992

2014
selscan 2.0: scanning for sweeps in unphased data

Zachary A Szpiech
Bioinformatics 40 ( 1) btae006 -btae006

29
2024
The Maintenance of Deleterious Variation in Wild Chinese Rhesus Macaques

Camille Steux , Zachary A Szpiech
Genome Biology and Evolution 16 ( 6)

2
2024
Differentiating mechanism from outcome for ancestry-assortative mating in admixed human populations

Dashiell J Massey , Zachary A Szpiech , Amy Goldberg
bioRxiv 2024.06. 06.597727 -2024.06. 06.597727

2024