Breath gas metabolites and bacterial metagenomes from cystic fibrosis airways indicate active pH neutral 2,3-butanedione fermentation

Katrine L Whiteson , Simone Meinardi , Yan Wei Lim , Robert Schmieder
The ISME Journal 8 ( 6) 1247 -1258

122
2014
Minimum information about an uncultivated virus genome (MIUVIG)

J Rodney Brister , Arvind Varsani , Clara Amid , Ramy K Aziz
Nature Biotechnology 37 ( 1) 29 -37

290
2019
Microbial, host and xenobiotic diversity in the cystic fibrosis sputum metabolome.

Robert A Quinn , Vanessa V Phelan , Katrine L Whiteson , Neha Garg
The ISME Journal 10 ( 6) 1483 -1498

91
2016
A genomic perspective on a new bacterial genus and species from the Alcaligenaceae family, Basilea psittacipulmonis.

Katrine L Whiteson , David Hernandez , Vladimir Lazarevic , Nadia Gaia
BMC Genomics 15 ( 1) 169 -169

4
2014
Solutions in microbiome engineering: prioritizing barriers to organism establishment

Michaeline BN Albright , Stilianos Louca , Daniel E Winkler , Kelli L Feeser
The ISME journal 16 ( 2) 331 -338

39
2022
RNA viromics of Southern California wastewater and detection of SARS-CoV-2 single-nucleotide variants

Jason A Rothman , Theresa B Loveless , Joseph Kapcia III , Eric D Adams
Applied and environmental microbiology 87 ( 23) e01448 -21

21
2021
What Lies Beneath? Taking the Plunge into the Murky Waters of Phage Biology

Mirjam Zünd , Sage JB Dunham , Jason A Rothman , Katrine L Whiteson
Msystems 8 ( 1) e00807 -22

2023
Global phylogeography and ancient evolution of the widespread human gut virus crAssphage

Robert A Edwards , Alejandro A Vega , Holly M Norman , Maria Ohaeri
Nature microbiology 4 ( 10) 1727 -1736

72
2019
Virus discovery by metagenomics: the (im) possibilities

Bas E Dutilh , Alejandro Reyes , Richard J Hall , Katrine L Whiteson
Frontiers in microbiology 8 1710 -1710

43
2017
Sex‐specific associations between AD genotype and the microbiome of human amyloid beta knock‐in (hAβ‐KI) mice

Sage JB Dunham , Julio Avelar‐Barragan , Jason A Rothman , Eric D Adams
Alzheimer's & Dementia

2024
Oral microbial communities in children, caregivers, and associations with salivary biomeasures and environmental tobacco smoke exposure

Jason A Rothman , Jenna L Riis , Katrina R Hamilton , Clancy Blair
Msystems 8 ( 4) e00036 -23

2
2023
Liquid chromatography mass spectrometry detection of antibiotic agents in sputum from persons with cystic fibrosis

Tara Gallagher , Stefan Riedel , Joseph Kapcia , Lindsay J Caverly
Antimicrobial agents and chemotherapy 65 ( 2) 10.1128/aac. 00927 -20

7
2021
Salivary metabolomics in the family environment: A large-scale study investigating oral metabolomes in children and their parental caregivers

Jason A Rothman , Hillary L Piccerillo , Jenna L Riis , Douglas A Granger
bioRxiv 2024.02. 21.581494 -2024.02. 21.581494

2024
Mechanisms of site-specific recombination

Nigel DF Grindley , Katrine L Whiteson , Phoebe A Rice
Annu. Rev. Biochem. 75 567 -605

949
2006
A retrospective, observational study of 12 cases of expanded-access customized phage therapy: production, characteristics, and clinical outcomes

Sabrina I Green , Justin R Clark , Haroldo H Santos , Kyle E Weesner
Clinical Infectious Diseases 77 ( 8) 1079 -1091

19
2023
Longitudinal analysis of the microbiome and metabolome in the 5xfAD mouse model of Alzheimer’s disease

Sage JB Dunham , Katelyn A McNair , Eric D Adams , Julio Avelar-Barragan
MBio 13 ( 6) e01794 -22

16
2022
12
2022
Distinct colon mucosa microbiomes associated with tubular adenomas and serrated polyps

Julio Avelar-Barragan , Lauren DeDecker , Zachary N Lu , Bretton Coppedge
npj Biofilms and Microbiomes 8 ( 1) 69 -69

9
2022
Integrating virus monitoring strategies for safe non-potable water reuse

Sunny C Jiang , Heather N Bischel , Ramesh Goel , Diego Rosso
Water 14 ( 8) 1187 -1187

7
2022