High-throughput bacterial functional genomics in the sequencing era.

Andrew N Gray , Byoung-Mo Koo , Anthony L Shiver , Jason M Peters
Current Opinion in Microbiology 27 86 -95

42
2015
Bacterial CRISPR: accomplishments and prospects.

Jason M Peters , Melanie R Silvis , Dehua Zhao , John S Hawkins
Current Opinion in Microbiology 27 121 -126

87
2015
Fatty acid synthesis knockdown promotes biofilm wrinkling and inhibits sporulation in Bacillus subtilis

Heidi A Arjes , Haiwen Gui , Rachel Porter , Esha Atolia
Mbio 13 ( 5) e01388 -22

2022
1
2023
Systematic genome-wide discovery of host factors governing bacteriophage infectivity

Chutikarn Chitboonthavisuk , Cody Martin , Phil Huss , Jason M Peters
bioRxiv 2024.04. 20.590424 -2024.04. 20.590424

2024
Targeted transcriptional repression in bacteria using CRISPR interference (CRISPRi)

John S Hawkins , Spencer Wong , Jason M Peters , Ricardo Almeida
CRISPR: Methods and protocols 349 -362

76
2015
A Targeted Genome-scale Overexpression Platform for Proteobacteria

Amy B Banta , Kevin S Myers , Ryan D Ward , Rodrigo A Cuellar
bioRxiv

2024
Morphological and transcriptional responses to CRISPRi knockdown of essential genes in Escherichia coli

Melanie R Silvis , Manohary Rajendram , Handuo Shi , Hendrik Osadnik
MBio 12 ( 5) 10.1128/mbio. 02561 -21

38
2021
Inhibition of isoleucyl-tRNA synthetase by the hybrid antibiotic thiomarinol

Rachel A Johnson , Andrew N Chan , Ryan D Ward , Caylie A McGlade
Journal of the American Chemical Society 143 ( 31) 12003 -12013

16
2021
Essential gene knockdowns reveal genetic vulnerabilities and antibiotic sensitivities in Acinetobacter baumannii

Ryan D Ward , Jennifer S Tran , Amy B Banta , Emily E Bacon
Mbio 15 ( 2) e02051 -23

8
2024
The genetics of aerotolerant growth in an alphaproteobacterium with a naturally reduced genome

Amy L Enright , Amy B Banta , Ryan D Ward , Julio Rivera Vazquez
MBio 14 ( 6) e01487 -23

4
2023
Essential Gene Phenotypes Reveal Antibiotic Mechanisms and Synergies in Acinetobacter baumannii

Ryan D Ward , Jennifer S Tran , Amy B Banta , Emily E Bacon
bioRxiv 2022.11. 09.515830 -2022.11. 09.515830

2
2022
CRISPRi functional genomics in bacteria and its application to medical and industrial research

Amy L Enright , William J Heelan , Ryan D Ward , Jason M Peters
Microbiology and Molecular Biology Reviews e00170 -22

2024
Investigating Pseudomonas aeruginosa Gene Function During Pathogenesis Using Mobile-CRISPRi

Michelle A Yu , Amy B Banta , Ryan D Ward , Neha K Prasad
Springer US 13 -32

2023
The Genetics of Aerotolerant Growth in a Naturally Reduced Genome Alphaproteobacterium

Amy L Enright , Amy B Banta , Ryan D Ward , Julio Rivera Vazquez
bioRxiv 2023.06. 12.544693 -2023.06. 12.544693

2023
Inducible CRISPRI-based operon silencing and selective in Trans gene complementation in Borrelia burgdorferi

Bryan T Murphy , Jacob J Wiepen , Huan He , Ankita S Pramanik
Journal of Bacteriology 205 ( 2) e00468 -22

7
2023
Mobile-CRISPRi as a powerful tool for modulating Vibrio gene expression

Logan J Geyman , Madeline P Tanner , Natalia Rosario-Melendez , Jason M Peters
Applied and Environmental Microbiology 90 ( 6) e00065 -24

2
2024
Mobile-CRISPRi protocol optimization for Vibrionaceae

Logan J Geyman , Madeline P Tanner , Natalia Rosario-Meléndez , Jason M Peters
Microbiology Resource Announcements e00040 -24

2024
Physiological Roles of an Acinetobacter-specific σ Factor

Emily E Bacon , Kevin S Myers , Rubén Iruegas-López , Amy B Banta
bioRxiv 2024.07. 08.602572 -2024.07. 08.602572

2024
Modular, inducible, and titratable expression systems for Escherichia coli and Acinetobacter baumannii

Emily E Bacon , Jennifer S Tran , Nischala Nadig , Jason M Peters
bioRxiv 2024.05. 28.596346 -2024.05. 28.596346

2024