Predicting transcription factor binding sites using DNA shape features based on shared hybrid deep learning architecture
De-Shuang Huang , Zhen Shen , Qinhu Zhang , Jianqiang Li
Molecular therapy. Nucleic acids 24 154 -163
2021
WGMFDDA: A Novel Weighted-Based Graph Regularized Matrix Factorization for Predicting Drug-Disease Associations.
Zhu-Hong You , Zhan-Heng Chen , Li-Ping Li , Mei-Neng Wang
international conference on intelligent computing 542 -551
6
2020
A Novel Method to Predict Drug-Target Interactions Based on Large-Scale Graph Representation Learning
Zhu-Hong You , Lei Wang , Lun Hu , Leon Wong
Cancers 13 ( 9) 2111
19
2021
A learning based framework for diverse biomolecule relationship prediction in molecular association network.
Zhen-Hao Guo , Zhu-Hong You , De-Shuang Huang , Hai-Cheng Yi
Communications Biology 3 ( 1) 118
2
2020
Prediction of Drug-Target Interactions From Multi-Molecular Network Based on Deep Walk Embedding Model.
Zhan-Heng Chen , Zhu-Hong You , Zhen-Hao Guo , Hai-Cheng Yi
Frontiers in Bioengineering and Biotechnology 8 338
44
2020
ACP-DL: A Deep Learning Long Short-Term Memory Model to Predict Anticancer Peptides Using High-Efficiency Feature Representation.
Hai-Cheng Yi , Zhu-Hong You , Xi Zhou , Li Cheng
Molecular therapy. Nucleic acids 17 1 -9
38
2019
An Improved Deep Forest Model for Predicting Self-Interacting Proteins From Protein Sequence Using Wavelet Transformation
Zhou He , Ji-Ren Zhou , Yangming Li , Leon Wong
Frontiers in Genetics 10 ( 3) 90
18
2019
An Ensemble Classifier with Random Projection for Predicting Protein-Protein Interactions Using Sequence and Evolutionary Information
Xiao-Yu Song , Zhan-Heng Chen , Xiang-Yang Sun , Zhu-Hong You
Applied Sciences 8 ( 1) 89
12
2018
Prediction of Self-Interacting Proteins from Protein Sequence Information Based on Random Projection Model and Fast Fourier Transform
Zhan-Heng Chen , Zhu-Hong You , Li-Ping Li , Yan-Bin Wang
International Journal of Molecular Sciences 20 ( 4) 930
15
2019
Prediction of protein self-interactions using stacked long short-term memory from protein sequences information.
Yan-Bin Wang , Zhu-Hong You , Xiao Li , Tong-Hai Jiang
BMC Systems Biology 12 ( 8) 129
13
2018
A Learning-Based Method for LncRNA-Disease Association Identification Combing Similarity Information and Rotation Forest
Zhen-Hao Guo , Zhu-Hong You , Yan-Bin Wang , Hai-Cheng Yi
iScience 19 786 -795
64
2019
MIPDH: A Novel Computational Model for Predicting microRNA–mRNA Interactions by DeepWalk on a Heterogeneous Network
Leon Wong , Zhu-Hong You , Zhen-Hao Guo , Hai-Cheng Yi
ACS Omega 5 ( 28) 17022 -17032
14
2020
GNMFLMI: Graph Regularized Nonnegative Matrix Factorization for Predicting LncRNA-MiRNA Interactions
Mei-Neng Wang , Zhu-Hong You , Li-Ping Li , Leon Wong
bioRxiv 835934
25
2019
Predicting of Drug-Disease Associations via Sparse Auto-Encoder-Based Rotation Forest
Han-Jing Jiang , Zhu-Hong You , Kai Zheng , Zhan-Heng Chen
international conference on intelligent computing 369 -380
5
2019
A deep learning-based method for drug-target interaction prediction based on long short-term memory neural network
Yan-Bin Wang , Zhu-Hong You , Shan Yang , Hai-Cheng Yi
BMC Medical Informatics and Decision Making 20 ( 2) 1 -9
74
2020
MeSHHeading2vec: a new method for representing MeSH headings as vectors based on graph embedding algorithm.
Zhen-Hao Guo , Zhu-Hong You , De-Shuang Huang , Hai-Cheng Yi
Briefings in Bioinformatics 22 ( 2) 2085 -2095
31
2021
NEMPD: a network embedding-based method for predicting miRNA-disease associations by preserving behavior and attribute information
Bo-Ya Ji , Zhu-Hong You , Zhan-Heng Chen , Leon Wong
BMC Bioinformatics 21 ( 1) 401 -401
4
2020
Identification of self-interacting proteins by integrating random projection classifier and finite impulse response filter.
Zhan-Heng Chen , Zhu-Hong You , Li-Ping Li , Yan-Bin Wang
BMC Genomics 20 ( 13) 1 -10
2019
Bioentity2vec: Attribute- and behavior-driven representation for predicting multi-type relationships between bioentities.
Zhen-Hao Guo , Zhu-Hong You , Yan-Bin Wang , De-Shuang Huang
GigaScience 9 ( 6)
3
2020
A survey of transformer-based multimodal pre-trained modals
Xue Han , Yi-Tong Wang , Jun-Lan Feng , Chao Deng
Neurocomputing 515 89 -106
2023