Wen-Feng Zeng 曾文锋
机构: pFind Lab, ICT CAS; MannLab, MPIB
每年引用次数
引用次数
引用: 2,625
H-指数: 24
I10-指数 : 30
出版物: 53
Trends in mass spectrometry-based large-scale N-glycopeptides analysis
Zeng Wen-Feng , Zhang Yang , Liu Ming-Qi , Wu Jian-Qiang
CHINESE ACAD SCIENCES, INST BIOPHYSICS 43 ( 6)
3
2016
Accurate determination of precursor ions for peptides in large-scale protein identification
Yuan Zuo-Fei , Wu Long , Liu Chao , Chi Hao
PROGRESS IN BIOCHEMISTRY AND BIOPHYSICS 40 ( 1) 80 -92
1
2013
pDeep3: Toward More Accurate Spectrum Prediction with Fast Few-Shot Learning.
Wen-Feng Zeng , Ching Tarn
Analytical Chemistry 93 ( 14) 5815 -5822
2021
pDeepXL: MS/MS Spectrum Prediction for Cross-Linked Peptide Pairs by Deep Learning.
Hao Chi , Si-Min He , Wen-Feng Zeng , Zhen-Lin Chen
Journal of Proteome Research 20 ( 5) 2570 -2582
2
2021
pQuant improves quantitation by keeping out interfering signals and evaluating the accuracy of calculated ratios.
Chao Liu , Chun-Qing Song , Zuo-Fei Yuan , Yan Fu
Analytical Chemistry 86 ( 11) 5286 -5294
47
2014
Comprehensive identification of peptides in tandem mass spectra using an efficient open search engine.
Hao Chi , Chao Liu , Hao Yang , Wen-Feng Zeng
Nature Biotechnology 36 ( 11) 1059 -1061
214
2018
A note on the false discovery rate of novel peptides in proteogenomics
Kun Zhang , Yan Fu , Wen-Feng Zeng , Kun He
Bioinformatics 31 ( 20) 3249 -3253
17
2015
pGlyco: a pipeline for the identification of intact N-glycopeptides by using HCD- and CID-MS/MS and MS3.
Wen-Feng Zeng , Ming-Qi Liu , Yang Zhang , Jian-Qiang Wu
Scientific Reports 6 ( 1) 25102 -25102
88
2016
pDeep: Predicting MS/MS Spectra of Peptides with Deep Learning
Xie-Xuan Zhou , Wen-Feng Zeng , Hao Chi , Chunjie Luo
Analytical Chemistry 89 ( 23) 12690 -12697
159
2017
Open-pNovo: De Novo Peptide Sequencing with Thousands of Protein Modifications
Hao Yang , Hao Chi , Wen-Jing Zhou , Wen-Feng Zeng
Journal of Proteome Research 16 ( 2) 645 -654
15
2017
A high-speed search engine pLink 2 with systematic evaluation for proteome-scale identification of cross-linked peptides
Zhen-Lin Chen , Jia-Ming Meng , Yong Cao , Ji-Li Yin
Nature Communications 10 ( 1) 3404
236
2019
pGlyco 2.0 enables precision N-glycoproteomics with comprehensive quality control and one-step mass spectrometry for intact glycopeptide identification.
Ming-Qi Liu , Wen-Feng Zeng , Pan Fang , Wei-Qian Cao
Nature Communications 8 ( 1) 438
243
2017
pTop 1.0: A High-Accuracy and High-Efficiency Search Engine for Intact Protein Identification
Rui-Xiang Sun , Lan Luo , Long Wu , Rui-Min Wang
Analytical Chemistry 88 ( 6) 3082 -3090
33
2016
pValid: Validation Beyond the Target-Decoy Approach for Peptide Identification in Shotgun Proteomics.
Wen-Jing Zhou , Hao Yang , Wen-Feng Zeng , Kun Zhang
Journal of Proteome Research 18 ( 7) 2747 -2758
8
2019
Open-pFind enables precise, comprehensive and rapid peptide identification in shotgun proteomics
Hao Chi , Chao Liu , Hao Yang , Wen-Feng Zeng
bioRxiv 285395
7
2018
pNovo 3: precise de novo peptide sequencing using a learning-to-rank framework
Hao Yang , Hao Chi , Wen-Feng Zeng , Wen-Jing Zhou
Bioinformatics 35 ( 14) i183 -i190
51
2019
MS/MS Spectrum Prediction for Modified Peptides Using pDeep2 Trained by Transfer Learning.
Wen-Feng Zeng , Xie-Xuan Zhou , Wen-Jing Zhou , Hao Chi
Analytical Chemistry 91 ( 15) 9724 -9731
24
2019
pNovo+: de novo peptide sequencing using complementary HCD and ETD tandem mass spectra.
Hao Chi , Haifeng Chen , Kun He , Long Wu
Journal of Proteome Research 12 ( 2) 615 -625
66
2013
pGlycoQuant with a deep residual network for quantitative glycoproteomics at intact glycopeptide level
Siyuan Kong , Pengyun Gong , Wen-Feng Zeng , Biyun Jiang
Nature Communications 13 ( 1) 7539
2022
AlphaPept, a modern and open framework for MS-based proteomics
Maximilian T Strauss , Isabell Bludau , Wen-Feng Zeng , Eugenia Voytik
bioRxiv 2021 -07
15
2021