Jeffrey Kimbrel
机构: Lawrence Livermore National Lab
每年引用次数
引用次数
引用: 4,911
H-指数: 23
I10-指数 : 29
出版物: 54
Genome-enabled Discovery and Characterization of Type III Effector-encoding Genes of Plant Symbiotic Bacteria
Jeffrey A. Kimbrel
2012
Copper Delivery by the Copper Chaperone for Chloroplast and Cytosolic Copper/Zinc-Superoxide Dismutases: Regulation and Unexpected Phenotypes in an Arabidopsis Mutant
Christopher M. Cohu , Salah E. Abdel-Ghany , Kathryn A. Gogolin Reynolds , Alexander M. Onofrio
Molecular Plant 2 ( 6) 1336 -1350
63
2009
Attachment between heterotrophic bacteria and microalgae influences symbiotic microscale interactions.
Ty J. Samo , Jeffrey A. Kimbrel , Daniel J. Nilson , Jennifer Pett‐Ridge
Environmental Microbiology 20 ( 12) 4385 -4400
49
2018
RNA-Seq for Plant Pathogenic Bacteria
Jeffrey A. Kimbrel , Yanming Di , Jason S. Cumbie , Jeff H. Chang
Genes 2 ( 4) 689 -705
6
2011
Higher order asymptotics for negative binomial regression inferences from RNA-sequencing data.
Yanming Di , Sarah C. Emerson , Daniel W. Schafer , Jeffrey A. Kimbrel
Statistical Applications in Genetics and Molecular Biology 12 ( 1) 49 -70
9
2013
Sequencing and De Novo Transcriptome Assembly of Brachypodium sylvaticum (Poaceae)
Samuel E. Fox , Justin Preece , Jeffrey A. Kimbrel , Gina L. Marchini
Applications in Plant Sciences 1 ( 3) 1200011
28
2013
Mutualistic Co-evolution of Type III Effector Genes in Sinorhizobium fredii and Bradyrhizobium japonicum
Jeffrey A. Kimbrel , William J. Thomas , Yuan Jiang , Allison L. Creason
PLoS Pathogens 9 ( 2) e1003204
51
2013
GENE-Counter: A Computational Pipeline for the Analysis of RNA-Seq Data for Gene Expression Differences
Jason S. Cumbie , Jeffrey A. Kimbrel , Yanming Di , Daniel W. Schafer
PLoS ONE 6 ( 10) e25279
56
2011
Host selection and stochastic effects influence bacterial community assembly on the microalgal phycosphere
Jeffrey A. Kimbrel , Ty J. Samo , Christopher Ward , Daniel Nilson
Algal Research-Biomass Biofuels and Bioproducts 40 101489
44
2019
Bacterial communities protect the alga Microchloropsis salina from grazing by the rotifer Brachionus plicatilis
Carolyn L. Fisher , Christopher S. Ward , Pamela D. Lane , Jeffrey A. Kimbrel
Algal Research-Biomass Biofuels and Bioproducts 40 101500
14
2019
Microbial Community Structure and Functional Potential Along a Hypersaline Gradient
Jeffrey A. Kimbrel , Nicholas Ballor , Yu-Wei Wu , Maude M. David
Frontiers in Microbiology 9 1492 -1492
35
2018
Recombineering and stable integration of the Pseudomonas syringae pv. syringae 61 hrp/hrc cluster into the genome of the soil bacterium Pseudomonas fluorescens Pf0-1
William J. Thomas , Caitlin A. Thireault , Jeffrey A. Kimbrel , Jeff H. Chang
Plant Journal 60 ( 5) 919 -928
132
2009
Combining multiple functional annotation tools increases coverage of metabolic annotation
Marc Griesemer , Jeffrey A. Kimbrel , Carol E. Zhou , Ali Navid
BMC Genomics 19 ( 1) 948
13
2018
The membrane-associated monooxygenase in the butane-oxidizing Gram-positive bacterium Nocardioides sp. strain CF8 is a novel member of the AMO/PMO family.
Luis A. Sayavedra-Soto , Natsuko Hamamura , Chih-Wen Liu , Jeffrey A. Kimbrel
Environmental Microbiology Reports 3 ( 3) 390 -396
57
2011
The Draft Genome Sequence of Nocardioides sp. Strain CF8 Reveals the Scope of Its Metabolic Capabilities.
J. A. Kimbrel , J. Chang , D. J. Arp , L. A. Sayavedra-Soto
Genome Announcements 1 ( 4)
5
2013
Guanidine Riboswitch-Regulated Efflux Transporters Protect Bacteria against Ionic Liquid Toxicity.
Douglas A. Higgins , John M. Gladden , Jeff A. Kimbrel , Blake A. Simmons
Journal of Bacteriology 201 ( 13)
10
2019
Genome sequencing and comparative analysis of the carrot bacterial blight pathogen, Xanthomonas hortorum pv. carotae M081, for insights into pathogenicity and applications in molecular diagnostics.
JEFFREY A. KIMBREL , SCOTT A. GIVAN , TODD N. TEMPLE , KENNETH B. JOHNSON
Molecular Plant Pathology 12 ( 6) 580 -594
12
2011
Single-cell isotope tracing reveals functional guilds of bacteria associated with the diatom Phaeodactylum tricornutum
Xavier Mayali , Ty J Samo , Jeff A Kimbrel , Megan M Morris
Nature Communications 14 ( 1) 5642 -5642
4
2023
The ModelSEED Biochemistry Database for the integration of metabolic annotations and the reconstruction, comparison and analysis of metabolic models for plants, fungi and microbes.
Samuel M D Seaver , Filipe Liu , Qizhi Zhang , James Jeffryes
Nucleic Acids Research 49
90
2021
An improved, high-quality draft genome sequence of the Germination-Arrest Factor-producing Pseudomonas fluorescens WH6
Jeffrey A Kimbrel , Scott A Givan , Anne B Halgren , Allison L Creason
BMC Genomics 11 ( 1) 522 -522
48
2010
Steven J Blazewicz Jeff Chang Mary K. FIRESTONE Megan M Foley Bruce Hungate Ty Samo Janet K. Jansson Rachel Hestrin Patrik D'haeseleer Benjamin J. Koch Xavier Mayali Noah W. Sokol Erin E. Nuccio Rhona Stuart Blake A. Simmons Janaka N Edirisinghe José P. Faria Adam Paul Arkin Christopher Henry Michael P Thelen