System-wide approaches to uncover Th2 cell lineage commitment
Tapio Lönnberg
Annales Universitatis Turkuensis D 1040
2012
Comparing multiple time-course differentiation profiles of human T helper cells using a Bayesian approach
Riitta Lahesmaa , Soile Tuomela , Henna Järvenpää , Harri Lähdesmäki
2010
Systemic blockade of Clever-1 elicits lymphocyte activation alongside checkpoint molecule downregulation in patients with solid tumors: Results from a phase I/II clinical trial.
Sirpa Jalkanen , Maja J A de Jonge , Maija Hollmen , Tapio Lönnberg
Clinical Cancer Research
2021
Single-Cell Epigenomics and Functional Fine-Mapping of Atherosclerosis GWAS Loci.
Seppo Yla-Herttuala , Einari Aavik , Rédouane Aherrahrou , Casey E Romanoski
Circulation Research
2021
Microanatomy of the Human Atherosclerotic Plaque by Single-Cell Transcriptomics
Marie A.C. Depuydt , Koen H.M. Prange , Lotte Slenders , Tiit Örd
Circulation Research 127 ( 11) 1437 -1455
196
2020
Human adipose tissue-derived stem cell paracrine networks vary according metabolic risk and after TNFα-induced death: An analysis at the single-cell level
Wilfredo Oliva-Olivera , Daniel Castellano-Castillo , Ferdinand von Meyenn , Fernando Cardona
Metabolism-clinical and Experimental 116 154466
2021
Somatic mTOR mutation in clonally expanded T lymphocytes associated with chronic graft versus host disease
Anna Kreutzman , Urpu Salmenniemi , Tapio Lönnberg , Andrés Jerez
Nature Communications 11 ( 1) 2246
3
2020
Single-Cell Survey of Human Lymphatics Unveils Marked Endothelial Cell Heterogeneity and Mechanisms of Homing for Neutrophils
Akira Takeda , Maija Hollmén , Denis Dermadi , Junliang Pan
Immunity 51 ( 3) 561 -572.e5
39
2019
Transcriptome Dynamics Reveals Progressive Transition from Effector to Memory in CD4+ T cells
Megan S. F. Soon , Hyun Jae Lee , Jessica A. Engel , Jasmin Straube
bioRxiv 675967
1
2019
Peripheral blood DNA methylation differences in twin pairs discordant for Alzheimer’s disease
Mikko Konki , Maia Malonzo , Ida K. Karlsson , Noora Lindgren
Clinical Epigenetics 11 ( 1) 1 -12
7
2019
Single-cell analysis of CD4+ T-cell differentiation reveals three major cell states and progressive acceleration of proliferation
Valentina Proserpio , Andrea Piccolo , Liora Haim-Vilmovsky , Gozde Kar
Genome Biology 17 ( 1) 103 -103
47
2016
Global Chromatin State Analysis Reveals Lineage-Specific Enhancers during the Initiation of Human T helper 1 and T helper 2 Cell Polarization
R David Hawkins , Antti Larjo , Subhash K Tripathi , Ulrich Wagner
Immunity 38 ( 6) 1271 -1284
74
2013
Single-cell immune profiling reveals new insights into colorectal cancer.
Tapio Lönnberg , Michael JT Stubbington
Immunology and Cell Biology 97 ( 3) 241 -243
2019
Transcriptome dynamics of CD4+ T cells during malaria maps gradual transit from effector to memory.
Megan S. F. Soon , Hyun Jae Lee , Jessica A. Engel , Jasmin Straube
Nature Immunology 21 ( 12) 1597 -1610
4
2020
Adult-Onset Anti-Citrullinated Peptide Antibody-Negative Destructive Rheumatoid Arthritis Is Characterized by a Disease-Specific CD8+ T Lymphocyte Signature.
Tiina Kelkka , Paula Savola , Dipabarna Bhattacharya , Jani Huuhtanen
Frontiers in Immunology 11 578848
2020
Somatic Mutations in Clonally Expanded T-lymphocytes in Patients with Chronic Graft-Versus-Host Disease
Giljun Park , Daehong Kim , Jani Huuhtanen , Sofie Lundgren
bioRxiv 747196
2019
An integrative computational systems biology approach identifies differentially regulated dynamic transcriptome signatures which drive the initiation of human T helper cell differentiation.
Tarmo Äijö , Sanna M Edelman , Tapio Lönnberg , Antti Larjo
BMC Genomics 13 ( 1) 572 -572
21
2012
Simultaneously inferring T cell fate and clonality from single cell transcriptomes
Michael J.T. Stubbington , Tapio Lönnberg , Valentina Proserpio , Simon Clare
bioRxiv 025676
5
2015
A practical guide to single-cell RNA-sequencing for biomedical research and clinical applications.
Ashraful Haque , Jessica Engel , Sarah A. Teichmann , Tapio Lönnberg
Genome Medicine 9 ( 1) 75 -75
622
2017
Single-cell RNA-sequencing resolves self-antigen expression during mTEC development
Ricardo J. Miragaia , Xiuwei Zhang , Tomás Gomes , Valentine Svensson
Scientific Reports 8 ( 1) 685 -685
35
2018