Computational methods for the analysis of bacterial gene regulation
Rutger Wubbe Willem Brouwer
s.n.
2
2014
Deciphering the RNA landscape by RNAome sequencing
Kasper WJ Derks , Branislav Misovic , Mirjam CGN van den Hout , Christel EM Kockx
RNA Biology 12 ( 1) 30 -42
19
2015
Targeted Chromatin Capture (T2C): a novel high resolution high throughput method to detect genomic interactions and regulatory elements
Petros Kolovos , Harmen JG van de Werken , Nick Kepper , Jessica Zuin
Epigenetics & Chromatin 7 ( 1) 10 -10
73
2014
Targeted Next Generation Sequencing reveals previously unidentified TSC1 and TSC2 mutations.
Mark Nellist , Rutger WW Brouwer , Christel EM Kockx , Monique van Veghel-Plandsoen
BMC Medical Genetics 16 ( 1) 10 -10
80
2015
Genetic variants in RBFOX3 are associated with sleep latency
Najaf Amin , Karla V Allebrandt , Ashley Van Der Spek , Bertram Müller-Myhsok
European Journal of Human Genetics 24 ( 10) 1488 -1495
20
2016
Unraveling the genetics of congenital diaphragmatic hernia: an ongoing challenge
Erwin Brosens , Nina CJ Peters , Kim S van Weelden , Charlotte Bendixen
Frontiers in Pediatrics 9 800915
7
2022
Effect of bovine milk fat-based infant formulae on microbiota, metabolites and stool parameters in healthy term infants in a randomized, crossover, placebo-controlled trial
Ellen Looijesteijn , Rutger WW Brouwer , Ruud JW Schoemaker , Laurien H Ulfman
BMC nutrition 8 ( 1) 1 -14
2
2022
Temozolomide and radiotherapy versus radiotherapy alone in patients with glioblastoma, IDH-wildtype: post hoc analysis of the EORTC randomized phase III CATNON trial
C Mircea S Tesileanu , Marc Sanson , Wolfgang Wick , Alba A Brandes
Clinical Cancer Research 28 ( 12) 2527 -2535
11
2022
Prognostic significance of genome-wide DNA methylation profiles within the randomized, phase 3, EORTC CATNON trial on non-1p/19q deleted anaplastic glioma
C Mircea S Tesileanu , Martin J Van Den Bent , Marc Sanson , Wolfgang Wick
Neuro-oncology 23 ( 9) 1547 -1559
23
2021
Zeb2 DNA-Binding Sites in Neuroprogenitor Cells Reveal Autoregulation and Affirm Neurodevelopmental Defects, Including in Mowat-Wilson Syndrome
Judith C Birkhoff , Anne L Korporaal , Rutger WW Brouwer , Karol Nowosad
Genes 14 ( 3) 629
2023
CRISPRs in the human genome are differentially expressed between malignant and normal adjacent to tumor tissue
Job van Riet , Chinmoy Saha , Nikolaos Strepis , Rutger WW Brouwer
Communications Biology 5 ( 1) 338 -338
7
2022
Identification of candidate enhancers controlling the transcriptome during the formation of interphalangeal joints
Karol Nowosad , Rutger WW Brouwer , Adrian Odrzywolski , Anne L Korporaal
Scientific Reports 12 ( 1) 12835 -12835
3
2022
Low Input Targeted Chromatin Capture (Low-T2C)
Ilias Boltsis , Karol Nowosad , Rutger WW Brouwer , Przemko Tylzanowski
Enhancers and Promoters: Methods and Protocols 165 -179
1
2021
Chromatin architecture and cis-regulatory landscape of the DACT2-SMOC2 locus in the developing synovial joint
Karol Nowosad , Ewa Hordyjewska-Kowalczyk , Aneta Malesa , Adrian Odrzywolski
bioRxiv 2022.10. 06.511134 -2022.10. 06.511134
2022
Identification of candidate regulatory elements controlling transcriptome during the formation of interphalangeal joints.
Przemko Tylzanowski , Karol Nowosad , Rutger WW Brouwer , Adrian Odrzywolski
2022
3D chromatin reprogramming primes human memory TH2 cells for rapid recall and pathogenic dysfunction
Anne Onrust-van Schoonhoven , Marjolein JW de Bruijn , Bernard Stikker , Rutger WW Brouwer
Science Immunology 8 ( 85) eadg3917 -eadg3917
4
2023
Bovine Milk Fat Intervention in Early Life and Its Impact on Microbiota, Metabolites and Clinical Phenotype: A Multi-Omics Stacked Regularization Approach
João Pereira , Lucas RF Bresser , Natal van Riel , Ellen Looijesteijn
BioMedInformatics 2 ( 2) 281 -296
2
2022
NOXA expression drives synthetic lethality to RUNX1 inhibition in pancreatic cancer
Josefina Doffo , Stefanos A Bamopoulos , Hazal Köse , Felix Orben
Proceedings of the National Academy of Sciences 119 ( 9) e2105691119 -e2105691119
21
2022
Contribution of rare and common variants determine complex diseases-Hirschsprung disease as a model.
Maria M Alves , Yunia Sribudiani , Rutger WW Brouwer , Jeanne Amiel
Developmental Biology 382 ( 1) 320 -329
89
2013
Comparison of the PU. 1 transcriptional regulome and interactome in human and mouse inflammatory dendritic cells
Maaike R Scheenstra , Patricia Martínez-Botía , Andrea Acebes-Huerta , Rutger WW Brouwer
Journal of leukocyte biology 110 ( 4) 735 -751
4
2021