Computational discovery and modelling of tandem domain repeats in proteins
Aleix Lafita Masip
Smpte Journal
2021
Cryo-EM structures of human RNA polymerase III in its unbound and transcribing states
Helga Grötsch , Alex Bateman , Christoph W. Müller , Matthias K. Vorländer
Nature Structural & Molecular Biology 28 ( 2) 210 -219
5
2021
Thrombospondin module 1 domain (TSP1) of the matricellular protein CCN3 shows an atypical disulfide pattern and incomplete CWR layers
Emma-Ruoqi Xu , Aleix Lafita , Alex Bateman , Marko Hyvönen
bioRxiv 779553
2019
Automated evaluation of quaternary structures from protein crystals
Spencer Bliven , Aleix Lafita , Althea Parker , Guido Capitani
bioRxiv 224717
61
2017
Biological and functional relevance of CASP predictions.
Tianyun Liu , Shirbi Ish-Shalom , Wen Torng , Aleix Lafita
Proteins 86 374 -386
5
2018
Modelling structural rearrangements in proteins using Euclidean distance matrices
Aleix Lafita , Alex Bateman
F1000Research 9 728
2020
Defining the remarkable structural malleability of a bacterial surface protein Rib domain implicated in infection
Fiona Whelan , Aleix Lafita , Samuel C. Griffiths , Rachael E. M. Cooper
Proceedings of the National Academy of Sciences of the United States of America 116 ( 52) 26540 -26548
4
2019
Analyzing the symmetrical arrangement of structural repeats in proteins with CE-Symm
Spencer E. Bliven , Aleix Lafita , Peter W. Rose , Guido Capitani
PLOS Computational Biology 15 ( 4)
13
2019
BioJava 5: A community driven open-source bioinformatics library
Aleix Lafita , Spencer Bliven , Andreas Prlić , Dmytro Guzenko
PLOS Computational Biology 15 ( 2)
18
2019
Assessment of protein assembly prediction in CASP13
Dmytro Guzenko , Aleix Lafita , Bohdan Monastyrskyy , Andriy Kryshtafovych
Proteins 87 ( 12) 1190 -1199
11
2019
Tandem domain swapping: determinants of multidomain protein misfolding.
Aleix Lafita , Pengfei Tian , Robert B Best , Alex Bateman
Current Opinion in Structural Biology 58 97 -104
10
2019
Discovery of Fibrillar Adhesins across Bacterial Species
Vivian Monzon , Aleix Lafita , Alex Bateman
bioRxiv
3
2020
Periscope Proteins are variable-length regulators of bacterial cell surface interactions.
Fiona Whelan , Aleix Lafita , James Gilburt , Clément Dégut
Proceedings of the National Academy of Sciences of the United States of America 118 ( 23)
7
2020
TADOSS: computational estimation of tandem domain swap stability
Aleix Lafita , Pengfei Tian , Robert B Best , Alex Bateman
Bioinformatics 35 ( 14) 2507 -2508
3
2019
Predicted mechanistic impacts of human protein missense variants
Jurgen Janes , Marc Muller , Senthil Selvaraj , Diogo Manoel
bioRxiv 2024.05. 29.596373 -2024.05. 29.596373
2024
Cryo-EM structures of human RNA polymerase I
Agata D Misiaszek , Mathias Girbig , Helga Grötsch , Florence Baudin
Nature structural & molecular biology 28 ( 12) 997 -1008
35
2021
The thrombospondin module 1 domain of the matricellular protein CCN3 shows an atypical disulfide pattern and incomplete CWR layers
E-R Xu , Aleix Lafita , Alex Bateman , Marko Hyvönen
Acta Crystallographica Section D: Structural Biology 76 ( 2) 124 -134
7
2020
Domain shuffling of a highly mutable ligand‐binding fold drives adhesin generation across the bacterial kingdom
Rob Barringer , Alice E Parnell , Aleix Lafita , Vivian Monzon
Proteins: Structure, Function, and Bioinformatics 91 ( 8) 1007 -1020
2023
Fine-tuning Protein Language Models with Deep Mutational Scanning improves Variant Effect Prediction
Aleix Lafita , Ferran Gonzalez , Mahmoud Hossam , Paul Smyth
arXiv preprint arXiv:2405.06729
2024
Cryo-EM structure of a single-chain β1-adrenoceptor–AmpC β-lactamase fusion protein
Gabriella Collu , Inayathulla Mohammed , Aleix Lafita , Tobias Bierig
bioRxiv 2021.09. 25.461805 -2021.09. 25.461805
1
2021