Crystal structure of the D85S mutant of bacteriorhodopsin: model of an O-like photocycle intermediate.

Shahab Rouhani , Jean-Philippe Cartailler , Marc T Facciotti , Peter Walian
Journal of Molecular Biology 313 ( 3) 615 -628

81
2001
Evolution of context dependent regulation by expansion of feast/famine regulatory proteins

Christopher L Plaisier , Fang-Yin Lo , Justin Ashworth , Aaron N Brooks
BMC Systems Biology 8 ( 1) 122 -122

20
2014
Crystal structures of bR(D85S) favor a model of bacteriorhodopsin as a hydroxyl-ion pump

Marc T Facciotti , Shahab Rouhani , Robert M Glaeser
FEBS Letters 564 ( 3) 301 -306

19
2004
Large scale physiological readjustment during growth enables rapid, comprehensive and inexpensive systems analysis.

Marc T Facciotti , Wyming L Pang , Fang-yin Lo , Kenia Whitehead
BMC Systems Biology 4 ( 1) 64 -64

25
2010
Prevalence of transcription promoters within archaeal operons and coding sequences

Tie Koide , David J Reiss , J Christopher Bare , Wyming Lee Pang
Molecular Systems Biology 5 ( 1) 285 -285

111
2009
A phylogenetically diverse class of blind type 1 opsins

Erin A Becker , Andrew I Yao , Phillip M Seitzer , Tobias Kind
bioRxiv 033027

2015
A Monte Carlo-based framework enhances the discovery and interpretation of regulatory sequence motifs

Phillip Seitzer , Elizabeth G Wilbanks , David J Larsen , Marc T Facciotti
BMC Bioinformatics 13 ( 1) 317 -317

18
2012
JContextExplorer: a tree-based approach to facilitate cross-species genomic context comparison

Phillip Seitzer , Tu Anh Huynh , Marc T Facciotti
BMC Bioinformatics 14 ( 1) 18 -18

8
2013
In a fit of pique: Analyzing microbial ChIP-Seq data with Pique

Russell Y Neches , Phillip M Seitzer , Elizabeth G Wilbanks , Marc T Facciotti
PeerJ Inc.

2014
Protein dynamics of bacteriorhodopsin probed by photon echo and transient absorption spectroscopy

John TM Kennis , Delmar S Larsen , Kaoru Ohta , Marc T Facciotti
International Conference on Ultrafast Phenomena WD35 -WD35

2002
Genome sequence of Haloarcula marismortui: A halophilic archaeon from the Dead Sea

Nitin S Baliga , Richard Bonneau , Marc T Facciotti , Min Pan
Genome Research 14 ( 11) 2221 -2234

266
2004
Global gene regulation by general transcription factors in archaea utilizes both bacterial and eukaryotic control mechanisms

Marc T Facciotti , Min Pan , Amardeep Kaur , Madhavi Vuthoori David J Reiss
Book of Abstracts 124 -124

A systems view of haloarchaeal strategies to withstand stress from transition metals

Amardeep Kaur , Min Pan , Megan Meislin , Marc T Facciotti
Genome Research 16 ( 7) 841 -854

89
2006
A systems view of haloarchaeal strategies to withstand stress from

Amardeep Kaur , Min Pan , Megan Meislin , Marc T Facciotti

2006
Haloarcula marismortui Genome sequence of

Nitin S Baliga , Richard Bonneau , Marc T Facciotti

197T. Tutoring in Biological Sciences (1-5)

Ralph C Aldredge III , Kyriacos Athanasiou , Sharon Aviran , Keith Baar
Group 530 754 -9149

New methods for confusion detection in course forums: student, teacher, and machine

Shay A Geller , Kobi Gal , Avi Segal , Kamali Sripathi
IEEE Transactions on Learning Technologies 14 ( 5) 665 -679

7
2021
# let’s-discuss: Analyzing Students’ Use of Emoji when Interacting with Course Readings

Ariel Blobstein , Marc T Facciotti , Michele Igo , David Karger
International Journal of Artificial Intelligence in Education 1 -32

2024
Improved Motif Detection in Large Sequence Sets with random sampling in a Kepler workflow

Sven Köhler , Phillip Seitzer , Marc T Facciotti , Bertram Ludäscher
Procedia Computer Science 9 1999 -1999

4
2012