Exploring the structure of single amylose chains using molecular dynamics

Hendrick de Haan , Mohammad Hassan Khatami , Mason Sullivan
APS 2019

2019
Using geometric criteria to study helix-like structures produced in molecular dynamics simulations of single amylose chains in water

Hendrick W. de Haan , Mohammad Hassan Khatami , William Barber
RSC Advances 11 ( 20) 11992 -12002

3
2021
A mutational and molecular dynamics study of the cys-loop GABA receptor Hco-UNC-49 from Haemonchus contortus: Agonist recognition in the nematode GABA receptor family

Josh Foster , Everett Cochrane , Mohammad Hassan Khatami , Sarah A. Habibi
International Journal for Parasitology: Drugs and Drug Resistance 8 ( 3) 534 -539

1
2018
Molecular Dynamics Simulations of Cod Antimicrobial Peptide Paralogs in Self-Assembled Bilayers

Mohammad Hassan Khatami , Marek Bromberek , Ivan Saika-Voivod , Valerie Booth
Biophysical Journal 104 ( 2) 2 -7

2013
All-Atom Molecular Dynamic Simulations of Pulmonary Surfactant Protein Sp-B Interacting with Lipid Bilayers

Mohammad Hassan Khatami , Ivan Saika-Voivod , Valerie Booth
Biophysical Journal 106 ( 2) 666a

2014
Bubble generation in liquid rope coiling

Hossein Hosseini , Ali Farnudi , Mohammad Hassan Khatami , Mehdi Habibi
RSC Advances 6 ( 107) 105469 -105475

1
2016
All-Atom Molecular Dynamics Simulations of Dimeric Lung Surfactant Protein B in Lipid Multilayers

Nicholas A. S. Robichaud , Mohammad Hassan Khatami , Ivan Saika-Voivod , Valerie Booth
International Journal of Molecular Sciences 20 ( 16) 3863

4
2019
Molecular Characterization of Binding Loop E in the Nematode Cys-Loop GABA Receptor.

Ariel Kwaka , Mohammad Hassan Khatami , Joshua Foster , Everett Cochrane
Molecular Pharmacology 94 ( 5) 1289 -1297

1
2018
Experimental and Computational Studies of Pulmonary Surfactant Protein SP-B Interacting with Lipid Bilayers

Mohammad Hassan Khatami , Ivan Saika-Voivod , Valerie Booth
Biophysical Journal 108 ( 2)

2015
Molecular dynamics simulations of histidine-containing cod antimicrobial peptide paralogs in self-assembled bilayers

Mohammad Hassan Khatami , Marek Bromberek , Ivan Saika-Voivod , Valerie Booth
Biochimica et Biophysica Acta 1838 ( 11) 2778 -2787

22
2014
All-atom molecular dynamics simulations of lung surfactant protein B: Structural features of SP-B promote lipid reorganization

Mohammad Hassan Khatami , Ivan Saika-Voivod , Valerie Booth
Biochimica et Biophysica Acta 1858 ( 12) 3082 -3092

7
2016
Two-dimensional 67Zn HYSCORE spectroscopy reveals that a Zn-bacteriochlorophyll aP' dimer is the primary donor (P840) in the type-1 reaction centers of Chloracidobacterium thermophilum.

Philip Charles , Vidmantas Kalendra , Zhihui He , Mohammad Hassan Khatami
Physical Chemistry Chemical Physics 22 ( 11) 6457 -6467

3
2020
Conjugating ligands to an equilibrated nanoparticle protein corona enables cell targeting in serum

Benjamin Stordy , Yuwei Zhang , Zahra Sepahi , Mohammad Hassan Khatami
Chemistry of Materials 34 ( 15) 6868 -6882

1
2022
Gate-based quantum computing for protein design

Mohammad Hassan Khatami , Udson C Mendes , Nathan Wiebe , Philip M Kim
PLOS Computational Biology 19 ( 4) e1011033 -e1011033

10
2023
Gate-based Quantum Computing for Protein Design

Philip Kim , Mohammad Hassan Khatami , Udson Mendes , Nathan Wiebe

2022
Liquid supercoiling

Neil Ribe , Mehdi Habibi , Hossein Hosseini , Mohammad Hassan Khatami
APS Division of Fluid Dynamics Meeting Abstracts 64 M16. 003 -M16. 003

2011
Characterization of adjacent charged residues near the agonist binding site of the nematode UNC-49 GABA receptor

Everett Cochrane , Joshua Foster , Mohammad Hassan Khatami , Hendrick W de Haan
Molecular and Biochemical Parasitology 252 111521 -111521

2
2022
GABA receptor, Molecular & Biochemical Parasitology,(2022)

Everett Cochrane , Joshua Foster , Mohammad Hassan Khatami , Hendrick W de Haan

2022
Coarse-Grained Simulations of Dendritic Carbohydrate Nanoparticles

Eduardo Mendez , Mohammad Hassan Khatami , Hendrick de Haan
APS March Meeting Abstracts 2019 L32. 009 -L32. 009

2019
Exploring the Structure and Dynamics of Carbohydrate Nanoparticles using Molecular Dynamics Simulations

Andrew Nagel , Mohammad Hassan Khatami , Hendrick de Haan
APS March Meeting Abstracts 2019 C55. 012 -C55. 012

2019