starfish: scalable pipelines for image-based transcriptomics

Deep Ganguli , Jeremy Freeman , Justin T. Kiggins , Tony Tung
Journal of Open Source Software 6 ( 61) 2440

2
2021
Controlling Dispersion during Single-Cell Polyacrylamide-Gel Electrophoresis in Open Microfluidic Devices

Qiong Pan , Kevin A. Yamauchi , Amy E. Herr
Analytical Chemistry 90 ( 22) 13419 -13426

9
2018
Laterally Aggregated Polyacrylamide Gels for Immunoprobed Isoelectric Focusing.

Shaheen Jeeawoody , Kevin A. Yamauchi , Alison Su , Amy E. Herr
Analytical Chemistry 92 ( 4) 3180 -3188

4
2020
ReScan, a Multiplex Diagnostic Pipeline, Pans Human Sera for SARS-CoV-2 Antigens.

Colin R. Zamecnik , Jayant V. Rajan , Kevin A. Yamauchi , Sabrina A. Mann
Cell Reports Medicine 1 ( 7) 100123 -100123

23
2020
Fabrication of an Open Microfluidic Device for Immunoblotting

Philippe Abdel-Sayed , Kevin A. Yamauchi , Rachel E. Gerver , Amy E. Herr
Analytical Chemistry 89 ( 18) 9643 -9648

3
2017
Profiling protein expression in circulating tumour cells using microfluidic western blotting

Elly Sinkala , Elodie Sollier-Christen , Corinne Renier , Elisabet Rosàs-Canyelles
Nature Communications 8 ( 1) 14622 -14622

209
2017
Therapy-Induced Evolution of Human Lung Cancer Revealed by Single-Cell RNA Sequencing.

Ashley Maynard , Caroline E. McCoach , Julia K. Rotow , Lincoln Harris
Cell 182 ( 5) 1232 -1251

252
2020
Subcellular Western Blotting of Single Cells

Kevin A. Yamauchi , Amy E. Herr
Microsystems & Nanoengineering 3 ( 1) 16079

54
2015
Arrayed isoelectric focusing using photopatterned multi‐domain hydrogels

Kevin A. Yamauchi , Augusto M. Tentori , Amy E. Herr
Electrophoresis 39 ( 8) 1040 -1047

4
2018
Detection of Isoforms Differing by a Single Charge Unit in Individual Cells

Augusto M. Tentori , Kevin A. Yamauchi , Amy E. Herr
Angewandte Chemie 55 ( 40) 12431 -12435

32
2016
Single cell-resolution western blotting

Chi-Chih Kang , Kevin A Yamauchi , Julea Vlassakis , Elly Sinkala
Nature Protocols 11 ( 8) 1508 -1530

153
2016
Validation and tuning of in situ transcriptomics image processing workflows with crowdsourced annotations

Jenny M Vo-Phamhi , Kevin A Yamauchi , Rafael Gómez-Sjöberg
PLoS Computational Biology 17 ( 8) e1009274 -e1009274

2021
Morphometry and mechanical instability at the onset of epithelial bladder cancer

Franziska L Lampart , Roman Vetter , Yifan Wang , Kevin A Yamauchi
bioRxiv 2023.08. 17.553533 -2023.08. 17.553533

2023
SpatialData: an open and universal data framework for spatial omics

Luca Marconato , Giovanni Palla , Kevin A Yamauchi , Isaac Virshup
Nature Methods 1 -5

17
2024
OME-Zarr: a cloud-optimized bioimaging file format with international community support

Josh Moore , Daniela Basurto-Lozada , Sébastien Besson , John Bogovic
Histochemistry and Cell Biology 160 ( 3) 223 -251

34
2023
MemBrain v2: an end-to-end tool for the analysis of membranes in cryo-electron tomography

Lorenz Lamm , Simon Zufferey , Ricardo D Righetto , Wojciech Wietrzynski
bioRxiv 2024.01. 05.574336 -2024.01. 05.574336

5
2024
Surforama: interactive exploration of volumetric data by leveraging 3D surfaces

Kevin A Yamauchi , Lorenz Lamm , Lorenzo Gaifas , Ricardo D Righetto
bioRxiv 2024.05. 30.596601 -2024.05. 30.596601

2024
Glycosaminoglycan and Collagen Remodeling During In Vitro Dynamic Compression of Articular Cartilage: Experiments and Finite Element Modeling

Kevin A Yamauchi , Christopher B Raub , Albert C Chen , Robert L Sah
Summer Bioengineering Conference 55614 V01BT62A005 -V01BT62A005

2013
Subcellular western blotting of single cells

Kevin A Yamauchi , Amy E Herr

28
2019
Electrophoretic separation devices and methods for using the same

Amy E Herr , Alex James Hughes , Elly Sinkala , Todd A Duncombe

4
2019