Changes in the Microbial Community Associated with the Large Benthic Foraminifera Cycloclypeus Carpenteri, Along a Depth Gradient

Elien Versteegen , Jan N Macher , Sonia J Rowley , Willem Renema
Journal of Foraminiferal Research 54 ( 1) 65 -74

2024
A New Tool for Faster Construction of Marine Biotechnology Collaborative Networks

Susana P. Gaudêncio , Ana Rotter , Irem Deniz , Giovanna Cristina Varese
Frontiers in Marine Science 8

2021
Comparison of environmental DNA and bulk-sample metabarcoding using highly degenerate cytochrome c oxidase I primers.

Jan-Niklas Macher , Aurelién Vivancos , Jeremy J. Piggott , Fernanda C. Centeno
Molecular Ecology Resources 18 ( 6) 1456 -1468

58
2018
The mitochondrial genomes of 11 aquatic macroinvertebrate species from Cyprus

Jan-Niklas Macher , Katerina Drakou , Athina Papatheodoulou , Berry van der Hoorn
bioRxiv

5
2020
eDNA metabarcoding of rivers: Is all eDNA everywhere, all the time?

Jan-Niklas Macher , Florian Leese
Proceedings of the 5th European Congress of Conservation Biology

1
2018
Uncovering bacterial and functional diversity in macroinvertebrate mitochondrial-metagenomic datasets by differential centrifugation

Jan-Niklas Macher , Arjen Speksnijder , Le Qin Choo , Berry van der Hoorn
Scientific Reports 9 ( 1) 10257 -10257

1
2019
Combining NCBI and BOLD databases for OTU assignment in metabarcoding and metagenomic datasets: The BOLD_NCBI _Merger

Jan-Niklas Macher , Till-Hendrik Macher , Florian Leese
Metabarcoding and Metagenomics 1 1 -8

9
2017
Using Environmental DNA to Monitor the Reintroduction Success of the Rhine Sculpin (Cottus rhenanus) in a Restored Stream

Christopher A. Hempel , Bianca Peinert , Arne J. Beermann , Vasco Elbrecht
Frontiers in Ecology and Evolution 8

2
2020
Assessing the phylogeographic history of the montane caddisfly Thremma gallicum using mitochondrial and restriction-site-associated DNA (RAD) markers.

Jan-Niklas Macher , Andrey Rozenberg , Steffen U. Pauls , Ralph Tollrian
Ecology and Evolution 5 ( 3) 648 -662

20
2015
First report of mitochondrial COI in foraminifera and implications for DNA barcoding

Jan-Niklas Macher , Jeremy G Wideman , Elsa B Girard , Anouk Langerak
Scientific reports 11 ( 1) 22165

5
2021
Mitochondrial cytochrome oxidase subunit 1: a promising molecular marker for species identification in foraminifera

Elsa B Girard , Anouk Langerak , Jamaluddin Jompa , Owen S Wangensteen
Frontiers in Marine Science 9 809659 -809659

10
2022
Mitochondrial cytochrome c oxidase subunit I (COI) metabarcoding of Foraminifera communities using taxon-specific primers

Jan-Niklas Macher , Dimitra Maria Bloska , Maria Holzmann , Elsa B Girard
PeerJ 10 e13952 -e13952

9
2022
DNA metabarcoding methods for the study of marine benthic meiofauna: a review

Romy Gielings , Maria Fais , Diego Fontaneto , Simon Creer
Frontiers in Marine Science 8 730063 -730063

26
2021
Exploring Pandora's Box

Florian Leese , Philipp Brand , Andrey Rozenberg , Christoph Mayer

2012
Single-cell genomics reveals the divergent mitochondrial genomes of Retaria (Foraminifera and Radiolaria)

Jan-Niklas Macher , Nicole L Coots , Yu-Ping Poh , Elsa B Girard
Mbio 14 ( 2) e00302 -23

3
2023
Environmental DNA confirms the reintroduction and fast dispersal of the rhine sculpin in a restored stream.

Christopher A Hempel , Gunnar Jacobs , Arne J Beermann , Vasco Elbrecht
95 ( 8) 358 -363

2020