Meta-omic signatures of microbial metal and nitrogen cycling in marine oxygen minimum zones
Jennifer B Glass , Cecilia B Kretz , Sangita Ganesh , Piyush Ranjan
Frontiers in Microbiology 6 998 -998
29
2015
The binding modes and binding affinities of artemisinin derivatives with Plasmodium falciparum Ca2+-ATPase (PfATP6)
Pradeep Kumar Naik , Mani Srivastava , Prasad Bajaj , Sankalp Jain
Journal of Molecular Modeling 17 ( 2) 333 -357
51
2011
Metatranscriptional Response of Chemoautotrophic Ifremeria nautilei Endosymbionts to Differing Sulfur Regimes
Sherry L Seston , Roxanne A Beinart , Neha Sarode , Abigail C Shockey
Frontiers in Microbiology 7 1074 -1074
9
2016
SAR11 bacteria linked to ocean anoxia and nitrogen loss.
Despina Tsementzi , Jieying Wu , Samuel Deutsch , Sangeeta Nath
Nature 536 ( 7615) 179 -183
131
2016
Gut Microbiota Predict Enterococcus Expansion but Not Vancomycin-Resistant Enterococcus Acquisition.
Rishi Chanderraj , Christopher A. Brown , Kevin Hinkle , Nicole Falkowski
mSphere 5 ( 6)
2020
Rapid identification of pathogens associated with ventilator-associated pneumonia by Nanopore sequencing
Nan Wu , Piyush Ranjan , Changyu Tao , Chao Liu
Respiratory Research 22 1 -14
3
2021
Commensal Oral Microbiota, Disease Severity, and Mortality in Fibrotic Lung Disease
David N O’Dwyer , John S Kim , Shwu-Fan Ma , Piyush Ranjan
American Journal of Respiratory and Critical Care Medicine 209 ( 9) 1101 -1110
5
2024
Buccal microbiome and survival in idiopathic pulmonary fibrosis: CleanUP-IPF
John Kim , Promi Das , Shwu-Fan Ma , Piyush Ranjan
European Respiratory Journal 62 ( suppl 67)
1
2023
Microbial metabolism and adaptations in Atribacteria‐dominated methane hydrate sediments
Jennifer B Glass , Piyush Ranjan , Cecilia B Kretz , Brook L Nunn
Environmental Microbiology 23 ( 8) 4646 -4660
21
2021
SquiggleNet: real-time, direct classification of nanopore signals
Yuwei Bao , Jack Wadden , John R Erb-Downward , Piyush Ranjan
Genome Biology 22 ( 1) 1 -16
49
2021
Rapid real-time squiggle classification for read until using rawmap
Harisankar Sadasivan , Jack Wadden , Kush Goliya , Piyush Ranjan
Archives of clinical and biomedical research 7 ( 1) 45 -45
32
2023
AMAISE: a machine learning approach to index-free sequence enrichment
Meera Krishnamoorthy , Piyush Ranjan , John R Erb-Downward , Robert P Dickson
Communications Biology 5 ( 1) 568 -568
2022
Horizontal transmission of gut microbiota attenuates mortality in lung fibrosis
Stephen J Gurczynski , Jay H Lipinski , Joshua Strauss , Shafiul Alam
JCI insight 9 ( 1)
3
2024
MetalloPred: A tool for hierarchical prediction of metal ion binding proteins using cluster of neural networks and sequence derived features
Pradeep Kumar Naik , Piyush Ranjan , Pooja Kesari , Sankalp Jain
J Biophys Chem 2 112 -123
7
2011
TpPred: a tool for hierarchical prediction of transport proteins using cluster of neural networks and sequence derived features
Sankalp Jain , Piyush Ranjan , Dipankar Sengupta , Pradeep Kumar Naik
Jaypee University of Information Technology, Solan, HP
3
2014
Metagenomics to identify pathogens in diabetic foot ulcers and the potential impact for clinical care
Brian M Schmidt , John Erb-Downward , Piyush Ranjan , Robert Dickson
Current Diabetes Reports 21 ( 8) 26 -26
10
2021
SNIKT: sequence-independent adapter identification and removal in long-read shotgun sequencing data
H. H. Ranjan , P. , Brown , C.
Bioinformatics 38 ( 15) 3830 -3832
4
2022
High-quality genome reconstruction of Candida albicans CHN1 using nanopore and illumina sequencing and hybrid assembly
Shipra Garg , Piyush Ranjan , John R Erb-Downward , Gary B Huffnagle
Microbiology Resource Announcements 10 ( 23) 10.1128/mra. 00299 -21
3
2021
The Lung Microbiome
Jay H Lipinksi , Piyush Ranjan , Robert P Dickson , David N O’Dwyer
The Journal of Immunology 212 ( 8) 1269 -1275
1
2024
Red Blood Cell DNA Capture and Delivery Drives Host Responses During Polymicrobial Sepsis
Long Kwan Lam , Nathan Klingensmith , Layal Sayegh , Emily Oatman
Research Square
2024