Bayesian inference in ecological and epidemiological models

Saritha Kalhari Kodikara
RMIT University

2020
Inferring about the extinction of a species using certain and uncertain sightings.

Saritha Kodikara , Haydar Demirhan , Lewi Stone
Journal of Theoretical Biology 442 98 -109

4
2018
Inferring extinction date of a species using non‐homogeneous Poisson processes with a change‐point

Saritha Kodikara , Haydar Demirhan , Yan Wang , Lewi Stone
Methods in Ecology and Evolution 12 ( 3) 530 -538

2021
Inferring extinction year using a Bayesian approach

Saritha Kodikara , Haydar Demirhan , Yan Wang , Andrew Solow
Methods in Ecology and Evolution 11 ( 8) 964 -973

1
2020
Bayesian updating to estimate extinction from sequential observation data

Colin J. Thompson , Saritha Kodikara , Mark A. Burgman , Haydar Demirhan
Biological Conservation 229 26 -29

1
2019
Using survival theory models to quantify extinctions

Colin J. Thompson , Saritha Kodikara , Mark A. Burgman , Haydar Demirhan
Biological Conservation 241 108345

1
2020
Statistical challenges in longitudinal microbiome data analysis

Saritha Kodikara , Susan Ellul , Kim-Anh Lê Cao
Briefings in Bioinformatics 23 ( 4) bbac273

3
2022
Gene-environment-gut interactions in Huntington's disease mice are associated with environmental modulation of the gut microbiome

Carolina Gubert , Chloe Jane Love , Saritha Kodikara , Jamie Jie Mei Liew
Iscience 25 ( 1)

21
2022
Faecal microbiota transplant ameliorates gut dysbiosis and cognitive deficits in Huntington’s disease mice

Carolina Gubert , Jocelyn M Choo , Chloe J Love , Saritha Kodikara
Brain Communications 4 ( 4) fcac205 -fcac205

20
2022
Microbiota DNA isolation, 16S rRNA amplicon sequencing, and bioinformatic analysis for bacterial microbiome profiling of rodent fecal samples

Chloe J Love , Carolina Gubert , Saritha Kodikara , Geraldine Kong
STAR protocols 3 ( 4) 101772 -101772

6
2022
BRAIN COMMUNICATIONS

Carolina Gubert , Jocelyn M Choo , Chloe J Love , Saritha Kodikara

2022
Microbial network inference for longitudinal microbiome studies with LUPINE

Saritha Kodikara , Kim-Anh Le Cao
bioRxiv 2024.05. 08.593086 -2024.05. 08.593086

2024