Free water volume fraction: an imaging biomarker to characterize moderate-to-severe traumatic brain injury.

Yusuf Osmanlioglu , John Whyte , Junghoon Kim , Drew Parker
Journal of Neurotrauma

2021
NIMG-21. DIFFERENTIATING TUMOR TYPES BASED ON THE PERITUMORAL MICROENVIRONMENT USING CONVOLUTIONAL NEURAL NETWORKS

Zahra Riahi Samani , Drew Parker , Jacob Antony Alappatt , Steven Brem
Neuro-oncology 22

2020
NIMG-45. DEEP LEARNING-BASED PERITUMORAL MICROSTRUCTURE MAPPING IN GLIOBLASTOMAS USING FREE WATER VOLUME FRACTION

Zahra Riahi Samani , Drew Parker , Jacob Antony Alappatt , Steven Brem
Neuro-oncology 22

2020
Wired for musical rhythm? A diffusion MRI-based study of individual differences in music perception

Archith Rajan , Jeffrey M Valla , Jacob Antony Alappatt , Megha Sharda
Brain Structure & Function 224 ( 5) 1711 -1722

2
2019
QC-Automator: Deep Learning-Based Automated Quality Control for Diffusion MR Images

Zahra Riahi Samani , Jacob Antony Alappatt , Drew Parker , Abdol Aziz Ould Ismail
Frontiers in Neuroscience 13 1456

4
2020
Deep learning-based peritumoral microstructure mapping in glioblastomas using free water volume fraction

Zahra Riahi Samani , Drew Parker , Jacob Antony Alappatt , Steven Brem
Neuro-Oncology 22 158 -158

1
2020
Free water elimination is necessary to characterize Diffuse Axonal Injury in moderate Traumatic Brain Injury

Jacob Alappatt , Drew Parker , AA Ould Ismail , Junghoon Kim
Abstract presented at ISMRM 27th Annual Meeting Exhibition

1
2019
Connectomic Assessment of Structural Network Alterations and Injury Burden in Moderate-to-severe Traumatic Brain Injury

Yusuf Osmanlioglu , Drew Parker , Jacob Alappatt , Junghoon Kim
BRAIN INJURY 36 86 -86

2022
QC-Aautomator: A deep learning based automated artifact detection in dMRI data

Zahra Riahi Samani , Jacob Alappatt , Parker Drew , Ragini Verma

Wired for music? – a diffusion MRI based study of normative music perception skills

Archith Rajan , Jacob Alappatt , Apurva Shah , Megha Sharda
Proceedings of the 26th International Society of Magnetic Resonance in Medicine

2018
Music and Emotion-A Case for North Indian Classical Music

Jeffrey M Valla , Jacob A Alappatt , Avantika Mathur , Nandini C Singh
Frontiers in Psychology 8 2115

6
2017
Neuroimaging Findings in US Government Personnel With Possible Exposure to Directional Phenomena in Havana, Cuba

Ragini Verma , Randel L Swanson , Drew Parker , Abdol Aziz Ould Ismail
JAMA 322 ( 4) 336 -347

8
2019
Deviation from normative brain development is associated with symptom severity in autism spectrum disorder.

Birkan Tunç , Lisa D Yankowitz , Drew Parker , Jacob A Alappatt
Molecular Autism 10 ( 1) 1 -14

8
2019
Connectomic consistency: a systematic stability analysis of structural and functional connectivity.

Yusuf Osmanlıoğlu , Jacob A Alappatt , Drew Parker , Ragini Verma
Journal of Neural Engineering 17 ( 4) 045004

5
2020
Connectomic assessment of injury burden and longitudinal structural network alterations in moderate‐to‐severe traumatic brain injury

Yusuf Osmanlıoğlu , Drew Parker , Jacob A Alappatt , James J Gugger
Human brain mapping 43 ( 13) 3944 -3957

8
2022
A graph based similarity measure for assessing altered connectivity in traumatic brain injury

Yusuf Osmanlıoğlu , Jacob A Alappatt , Drew Parker , Junghoon Kim
Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries: 4th International Workshop, BrainLes 2018, Held in Conjunction with MICCAI 2018, Granada, Spain, September 16, 2018, Revised Selected Papers, Part I 4 189 -198

7
2019
Graph matching based connectomic biomarker with learning for brain disorders

Rui Sherry Shen , Jacob A Alappatt , Drew Parker , Junghoon Kim
Uncertainty for Safe Utilization of Machine Learning in Medical Imaging, and Graphs in Biomedical Image Analysis: Second International Workshop, UNSURE 2020, and Third International Workshop, GRAIL 2020, Held in Conjunction with MICCAI 2020, Lima, Peru, October 8, 2020, Proceedings 2 131 -141

6
2020
A graph representation and similarity measure for brain networks with nodal features

Yusuf Osmanlıoğlu , Birkan Tunç , Jacob A Alappatt , Drew Parker
Graphs in Biomedical Image Analysis and Integrating Medical Imaging and Non-Imaging Modalities: Second International Workshop, GRAIL 2018 and First International Workshop, Beyond MIC 2018, Held in Conjunction with MICCAI 2018, Granada, Spain, September 20, 2018, Proceedings 2 14 -23

2
2018
Analysis of Consistency in Structural and Functional Connectivity of Human Brain

Yusuf Osmanlioğlu , Jacob A Alappatt , Drew Parker , Ragini Verma
2020 IEEE 17th International Symposium on Biomedical Imaging (ISBI) 2020 1694 -1697

1
2020
Music and Emotion. A Case for North Indian Classical Music

Jeffrey M Valla , Jacob A Alappatt , Avantika Mathur , Nandini C Singh
Ausdruck in der Musik 553 -575

2021