Multi-class support vector machines for protein secondary structure prediction.

Jagath C. Rajapakse , Minh N. Nguyen
Genome Informatics 14 218 -227

60
2003
Biological insights from topology independent comparison of protein 3D structures

Minh N. Nguyen , M. S. Madhusudhan
Nucleic Acids Research 39 ( 14)

34
2011
Characterization of Hydration Properties in Structural Ensembles of Biomolecules.

Mohan R. Pradhan , Minh N. Nguyen , Srinivasaraghavan Kannan , Stephen J. Fox
Journal of Chemical Information and Modeling 59 ( 7) 3316 -3329

3
2019
Discovering Putative Protein Targets of Small Molecules: A Study of the p53 Activator Nutlin.

Candida Vaz , Ted Hupp , MS MADHUSUDHAN , Luke Way
Journal of Chemical Information and Modeling 59 ( 4) 1529 -1546

12
2019
Di-codon usage for classification of genes

Minh N. Nguyen , Jianmin Ma , Gary B. Fogel , Jagath C. Rajapakse
BioSystems 98 ( 1) 1 -6

5
2009
Discovery of Rab1 binding sites using an ensemble of clustering methods.

Suryani Lukman , Minh N. Nguyen , Kelvin Sim , Jeremy C.M. Teo
Proteins 85 ( 5) 859 -871

5
2017
Structural analysis of protein tyrosine phosphatase 1B reveals potentially druggable allosteric binding sites.

Ammu Prasanna Kumar , Minh N. Nguyen , Chandra Verma , Suryani Lukman
Proteins 86 ( 3) 301 -321

7
2018
Di-codon Usage for Gene Classification

Minh N. Nguyen , Jianmin Ma , Gary B. Fogel , Jagath C. Rajapakse
pattern recognition in bioinformatics 5780 211 -221

7
2009
Prediction of Protein Secondary Structure with two-stage multi-class SVMs

Minh N. Nguyen , Jagath C. Rajapakse
data mining in bioinformatics 1 ( 3) 248 -269

33
2007
Prediction of protein relative solvent accessibility with a two-stage SVM approach

Minh N. Nguyen , Jagath C. Rajapakse
Proteins: Structure, Function, and Bioinformatics 59 ( 1) 30 -37

57
2005
51
2006
Extracting decision rules in prediction of protein secondary structure

Minh N. Nguyen , Jacek M. Zurada , Jagath C. Rajapakse
bioinformatics and bioengineering 1 -6

2008
Topology independent comparison of RNA 3D structures using the CLICK algorithm.

Minh N. Nguyen , Adelene Y. L. Sim , Yue Wan , M. S. Madhusudhan
Nucleic Acids Research 45 ( 1)

7
2017
Determination of the Relative Importance of Gene Function or Taxonomic Grouping to Codon Usage Bias Using Cluster Analysis and SVMs

Jianmin Ma , Minh N. Nguyen , Gary B. Fogel , Jagath C. Rajapakse
computational intelligence in bioinformatics and computational biology 1 -8

1
2006
Protein-Protein Interface Residue Prediction with SVM Using Evolutionary Profiles and Accessible Surface Areas

Minh N. Nguyen , Jagath C. Rajapakse
computational intelligence in bioinformatics and computational biology 1 -5

9
2006
The Multifaceted Roles of Molecular Dynamics Simulations in Drug Discovery.

Stephen John Fox , Jianguo Li , Yaw Sing Tan , Minh N. Nguyen
Current Pharmaceutical Design 22 ( 23) 3585 -3600

9
2016
The interfacial character of antibody paratopes: analysis of antibody-antigen structures.

Minh N Nguyen , Mohan R Pradhan , Chandra Verma , Pingyu Zhong
Bioinformatics 33 ( 19) 2971 -2976

45
2017
Simulations of mutant p53 DNA binding domains reveal a novel druggable pocket

Mohan R Pradhan , Jia Wei Siau , Srinivasaraghavan Kannan , Minh N Nguyen
Nucleic Acids Research 47 ( 4) 1637 -1652

19
2019
AllerCatPro—prediction of protein allergenicity potential from the protein sequence

Sebastian Maurer-Stroh , Nora L Krutz , Petra S Kern , Vithiagaran Gunalan
Bioinformatics 35 ( 17) 3020 -3027

31
2019